RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 POU3F3P20264 500 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-212ENST00000616140 CYB561P49447 251 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 RPP30P78346 268 aaKnown RBP12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF266Q14584 549 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 KCNRGQ8N5I3 272 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 SEMA6DQ8NFY4 1073 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 ATF6BQ99941 703 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 TCEAL7Q9BRU2 100 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 LHX6Q9UPM6 363 aa12.74□□□□□ -0.37
CPSF1-212ENST00000616140 OR5H14A6NHG9 310 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 H0YIG0 161 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 HBG1P69891 147 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 HBG2P69892 147 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 TMEM215Q68D42 235 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 FAM122CQ6P4D5 195 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 LILRA6Q6PI73 481 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF610Q8N9Z0 462 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 OR2AK2Q8NG84 335 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 OR4C3Q8NH37 302 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 CTSFQ9UBX1 484 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 PURGQ9UJV8 347 aaKnown RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 KCND3Q9UK17 655 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 VAMP5O95183 116 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 HBE1P02100 147 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 TNFSF4P23510 183 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF133P52736 654 aaPredicted RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 SNTB1Q13884 538 aaKnown RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 SLC17A1Q14916 467 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 PCK2Q16822 640 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 DMRTC1Q5HYR2 192 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 YRDCQ86U90 279 aaKnown RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 UPRTQ96BW1 309 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 OR2A14Q96R47 310 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 JAM3Q9BX67 310 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 BCO1Q9HAY6 547 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 TUBG2Q9NRH3 451 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 GPR173Q9NS66 373 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 CYSLTR2Q9NS75 346 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 SLC22A11Q9NSA0 550 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 CNOT1A5YKK6 2376 aaKnown RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 HYAL3O43820 417 aaPredicted RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 SPTBP11277 2137 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 KITLGP21583 273 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 FGF9P31371 208 aaPredicted RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 OPRM1P35372 400 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 PTGER4P35408 488 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 SNCAP37840 140 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 EXOSC2Q13868 293 aaKnown RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 PXDC1Q5TGL8 231 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 LINC01555Q8NAE3 123 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 RELL2Q8NC24 303 aaPredicted RBP12.73□□□□□ -0.37
CPSF1-212ENST00000616140 OR51A4Q8NGJ6 313 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 TXNIPQ9H3M7 391 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 PIGMQ9H3S5 423 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 C19orf12Q9NSK7 152 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 DUSP13Q9UII6 198 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 SIGLEC7Q9Y286 467 aa12.73□□□□□ -0.37
CPSF1-212ENST00000616140 A0A1W2PPC4 97 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 HMGA2P52926 109 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 HTD2P86397 168 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 EGR3Q06889 387 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 INSL4Q14641 139 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 SSX1Q16384 188 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 DMBX1Q8NFW5 382 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 YIPF5Q969M3 257 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 CCDC74AQ96AQ1 378 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 MUCL1Q96DR8 90 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 KIRREL1Q96J84 757 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 NKX3-1Q99801 234 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-212ENST00000616140 SLC39A9Q9NUM3 307 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 CSAG2Q9Y5P2 127 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 ST8SIA3O43173 380 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 RFX2P48378 723 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 MZT1Q08AG7 82 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 OR2L13Q8N349 312 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 OR52N5Q8NH56 324 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 MVB12AQ96EY5 273 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 DOK1Q99704 481 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 C20orf141Q9NUB4 165 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 NECAP2Q9NVZ3 263 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 SLCO1C1Q9NYB5 712 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 UNC13CQ8NB66 2214 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 RNF212BA8MTL3 300 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 NXPH3O95157 252 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 CTGFP29279 349 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 RBP2P50120 134 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 TLE4Q04727 773 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 MFSD4AQ8N468 514 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 OR51H1Q8NH63 302 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 MYOTQ9UBF9 498 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 M0R135 149 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 OIP5O43482 229 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 IGHEP01854 428 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 TAF9Q16594 264 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 ADAM5Q6NVV9 412 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 ANKRD9Q96BM1 317 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF799Q96GE5 643 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 NIPSNAP3BQ9BS92 247 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 ZCCHC4Q9H5U6 513 aa12.72□□□□□ -0.37
CPSF1-212ENST00000616140 NHSL1Q5SYE7 1610 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms