RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MYCBPQ99417 103 aaPredicted RBP12.5□□□□□ -0.41
UPF1-211ENST00000600868 ZNF649Q9BS31 505 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 MED18Q9BUE0 208 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 HDHD2Q9H0R4 259 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 DDX28Q9NUL7 540 aaKnown RBP12.5□□□□□ -0.41
UPF1-211ENST00000600868 ERVK13-1Q9NX77 482 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 PLEK2Q9NYT0 353 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 ATPIF1Q9UII2 106 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 EXOSC1Q9Y3B2 195 aaKnown RBP12.5□□□□□ -0.41
UPF1-211ENST00000600868 USP9XQ93008 2570 aaPredicted RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 DOPEY1Q5JWR5 2465 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 OR6C6A6NF89 314 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 RGS10O43665 173 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 SYNGR3O43761 229 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 DOK2O60496 412 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 TNFAIP8O95379 198 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 PTHP01270 115 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 IGLV1-44P01699 117 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 SERPINA5P05154 406 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 THBDP07204 575 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 ADRA2AP08913 450 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 IGFBP2P18065 325 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 MYL12AP19105 171 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 C21orf33P30042 268 aaPredicted RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 ROM1Q03395 351 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 ZNF85Q03923 595 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 GALEQ14376 348 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 RNLSQ5VYX0 342 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 ZNF774Q6NX45 483 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 TMEM154Q6P9G4 183 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 DEGS2Q6QHC5 323 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 ZNF322Q6U7Q0 402 aaPredicted RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 SEZ6L2Q6UXD5 910 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 VASH1Q7L8A9 365 aaPredicted RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 PRSS48Q7RTY5 328 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 EGFL6Q8IUX8 553 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 ZNF584Q8IVC4 421 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 CPEB3Q8NE35 698 aaKnown RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 OR1F12Q8NHA8 337 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 AKR7LQ8NHP1 331 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 SGCDQ92629 289 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 MRPL48Q96GC5 212 aaKnown RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 TBX5Q99593 518 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 COQ7Q99807 217 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 CDCA4Q9BXL8 241 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 ERVK-18Q9QC07 812 aa12.49□□□□□ -0.41
UPF1-211ENST00000600868 SPTBN1Q01082 2364 aaKnown RBP12.49□□□□□ -0.41
UPF1-211ENST00000600868 IQCMA0A1B0GVH7 501 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 TUBAL3A6NHL2 446 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ZNF878C9JN71 531 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 LIMS3P0CW19 117 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 LIMS4P0CW20 117 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ZNF14P17017 642 aaPredicted RBP12.48□□□□□ -0.41
UPF1-211ENST00000600868 EEF1B2P24534 225 aaKnown RBP12.48□□□□□ -0.41
UPF1-211ENST00000600868 OPRL1P41146 370 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ETV1P50549 477 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 MVKQ03426 396 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 RAB39AQ14964 217 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ZNF684Q5T5D7 378 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 PLEKHG7Q6ZR37 379 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 SSX6Q7RTT6 188 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 LHFPL3Q86UP9 236 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ZNF679Q8IYX0 411 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 RFLNBQ8N5W9 214 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ACBD4Q8NC06 268 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 LINC01560Q8TB33 94 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 DACH2Q96NX9 599 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 OR8B4Q96RC9 309 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ATF6BQ99941 703 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 ALG8Q9BVK2 526 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 NGBQ9NPG2 151 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 CENPMQ9NSP4 180 aa12.48□□□□□ -0.41
UPF1-211ENST00000600868 CHCHD3Q9NX63 227 aaKnown RBP12.48□□□□□ -0.41
UPF1-211ENST00000600868 PRR32B1ATL7 298 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 C19orf84I3L1E1 186 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 ZNF254O75437 659 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 SULT1C4O75897 302 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 HTR1AP08908 422 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 EPXP11678 715 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 STOMP27105 288 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 IDH3GP51553 393 aaPredicted RBP12.47□□□□□ -0.41
UPF1-211ENST00000600868 ACTA2P62736 377 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 GRB2P62993 217 aaKnown RBP12.47□□□□□ -0.41
UPF1-211ENST00000600868 ACTG2P63267 376 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 KRTAP27-1Q3LI81 207 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 CDONQ4KMG0 1287 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 KCTD20Q7Z5Y7 419 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 KRT77Q7Z794 578 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 WFDC8Q8IUA0 241 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 IL17RDQ8NFM7 739 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 SNX33Q8WV41 574 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 ZC3HAV1LQ96H79 300 aaKnown RBP12.47□□□□□ -0.41
UPF1-211ENST00000600868 C1QTNF6Q9BXI9 259 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 MROQ9BYG7 248 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 ZNF696Q9H7X3 374 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 NIPAL2Q9H841 368 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 ELOVL3Q9HB03 270 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 SLCO1C1Q9NYB5 712 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 NPAP1Q9NZP6 1156 aa12.47□□□□□ -0.41
UPF1-211ENST00000600868 CLEC2DQ9UHP7 191 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms