RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 OR5AP2Q8NGF4 316 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 FOXRED1Q96CU9 486 aaPredicted RBP16.5■□□□□ 0.23
UPF1-210ENST00000600689 RFC3P40938 356 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 FAM122BQ7Z309 247 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 FJX1Q86VR8 437 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 BCORP1Q8N888 145 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 OR4A4PQ8NGN8 299 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 TM4SF19Q96DZ7 209 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 CDCA3Q99618 268 aaPredicted RBP16.5■□□□□ 0.23
UPF1-210ENST00000600689 CKLFQ9UBR5 152 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 KLF15Q9UIH9 416 aa16.5■□□□□ 0.23
UPF1-210ENST00000600689 ARPC4-TTLL3A0A0A6YYG9 625 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 HRH1P35367 487 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 CD96P40200 585 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 C16orf52Q8NHV5 167 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 RPS4Y2Q8TD47 263 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 MCHR2Q969V1 340 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 MRPL38Q96DV4 380 aaKnown RBP16.49■□□□□ 0.23
UPF1-210ENST00000600689 GABRG3Q99928 467 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 SLC25A21Q9BQT8 299 aaPredicted RBP16.49■□□□□ 0.23
UPF1-210ENST00000600689 CHMP1AQ9HD42 196 aaPredicted RBP16.49■□□□□ 0.23
UPF1-210ENST00000600689 FAM60AQ9NP50 221 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 ADAP1O75689 374 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 ZNF735P0CB33 412 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 GNALP38405 381 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 PTGFRP43088 359 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 ELOCQ15369 112 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 CHRDL2Q6WN34 429 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 DNM1P46Q6ZS02 220 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 LINC00346Q8IVM7 164 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 OR4K17Q8NGC6 315 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 ARL11Q969Q4 196 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 MMP25Q9NPA2 562 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 GSKIPQ9P0R6 139 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 EMC9Q9Y3B6 208 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 TRBV23-1A0A0A0MS06 115 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 LOC101059948A0A1B0GTJ6 334 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 MSGN1A6NI15 193 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 XKRYO14609 159 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 STK17BO94768 372 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 APOC1P02654 83 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 NME2P22392 152 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 CTHP32929 405 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 SMAD2Q15796 467 aaKnown RBP16.49■□□□□ 0.23
UPF1-210ENST00000600689 AVPI1Q5T686 147 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 ZNF585AQ6P3V2 769 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 RRNAD1Q96FB5 475 aaKnown RBP16.49■□□□□ 0.23
UPF1-210ENST00000600689 CENPMQ9NSP4 180 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 EPHA6Q9UF33 1036 aa16.49■□□□□ 0.23
UPF1-210ENST00000600689 KLF2Q9Y5W3 355 aaPredicted RBP16.49■□□□□ 0.23
UPF1-210ENST00000600689 FREM3P0C091 2139 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 CD8AP01732 235 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 SERPINA5P05154 406 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 GNB3P16520 340 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 TACR3P29371 465 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 EGR4Q05215 589 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 RASGEF1BQ0VAM2 473 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 ELAVL1Q15717 326 aaKnown RBP16.48■□□□□ 0.23
UPF1-210ENST00000600689 GFOD2Q3B7J2 385 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 OR1M1Q8NGA1 313 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 OR13C3Q8NGS6 347 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 MARCH1Q8TCQ1 289 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 TAAR8Q969N4 342 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 SLC22A18Q96BI1 424 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 CTHRC1Q96CG8 243 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 PHB2Q99623 299 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 NRSN2Q9GZP1 204 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 S1PR5Q9H228 398 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 C1orf198Q9H425 327 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 A0A1B0GTI1 187 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 C9orf170A2RU37 121 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 FBXO24O75426 580 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 IFNA6P05013 189 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 S1PR1P21453 382 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 MED25Q71SY5 747 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 LYG2Q86SG7 212 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 TMEM229BQ8NBD8 167 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 OR4D6Q8NGJ1 314 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 FLVCR1-AS1Q8TAF5 88 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 HEBP2Q9Y5Z4 205 aa16.48■□□□□ 0.23
UPF1-210ENST00000600689 METTL12A8MUP2 240 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 CD2P06729 351 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 CT45A8P0DMV1 189 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 CT45A9P0DMV2 189 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 TOMM34Q15785 309 aaPredicted RBP16.47■□□□□ 0.23
UPF1-210ENST00000600689 CT45A2Q5DJT8 189 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 TMEM184AQ6ZMB5 413 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 GLYATL2Q8WU03 294 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 METTL21AQ8WXB1 218 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 BMFQ96LC9 184 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 VSTM2LQ96N03 204 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 C20orf24Q9BUV8 137 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 MEX3AA1L020 520 aaKnown RBP16.47■□□□□ 0.23
UPF1-210ENST00000600689 ACAA1P09110 424 aaPredicted RBP16.47■□□□□ 0.23
UPF1-210ENST00000600689 RPS4XP62701 263 aaKnown RBP16.47■□□□□ 0.23
UPF1-210ENST00000600689 SLC17A1Q14916 467 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 EXD3Q8N9H8 876 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 FAM131CQ96AQ9 280 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 MRGPRX1Q96LB2 322 aa16.47■□□□□ 0.23
UPF1-210ENST00000600689 GAL3ST4Q96RP7 486 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms