RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 DBHP09172 617 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 ALDH3B1P43353 468 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 NUDT6P53370 316 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 CRISP1P54107 249 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 TNK1Q13470 666 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 ALKBH6Q3KRA9 238 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 SLC18B1Q6NT16 456 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 TMEM154Q6P9G4 183 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 ZDHHC13Q8IUH4 622 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 GJC3Q8NFK1 279 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 ABHD4Q8TB40 342 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 PTP4A1Q93096 173 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 CENPNQ96H22 339 aaPredicted RBP13.06□□□□□ -0.32
LIG1-219ENST00000600055 C4orf45Q96LM5 186 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 CDADC1Q9BWV3 514 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 GABARAPL1Q9H0R8 117 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 WDR76Q9H967 626 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 BARX1Q9HBU1 254 aaPredicted RBP13.06□□□□□ -0.32
LIG1-219ENST00000600055 DLL4Q9NR61 685 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 NDRG4Q9ULP0 352 aaKnown RBP13.06□□□□□ -0.32
LIG1-219ENST00000600055 OAZ3Q9UMX2 235 aa13.06□□□□□ -0.32
LIG1-219ENST00000600055 ARID1AO14497 2285 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 H7C1Q1 480 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 SURF4O15260 269 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 ZNF250P15622 560 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 ZNF823P16415 610 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 MPV17P39210 176 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 PPOXP50336 477 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 EFNA4P52798 201 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 TMEM255AQ5JRV8 349 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 ELFN2Q5R3F8 820 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 LINC01590Q5TEZ4 76 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 KDM4DQ6B0I6 523 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 PARP8Q8N3A8 854 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 ZNF525Q8N782 197 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 OR6K6Q8NGW6 343 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 SYNPRQ8TBG9 265 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 SLC25A40Q8TBP6 338 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 DNAJC9Q8WXX5 260 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 TPK1Q9H3S4 243 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 POFUT1Q9H488 388 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 SLC25A19Q9HC21 320 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 DYNLRB1Q9NP97 96 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 KRT84Q9NSB2 600 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 CYB5R1Q9UHQ9 305 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 GRIP1Q9Y3R0 1128 aa13.05□□□□□ -0.32
LIG1-219ENST00000600055 ZNF469Q96JG9 3925 aaPredicted RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 HIVEP1P15822 2718 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 A0A1W2PPW3 197 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 SMAD7O15105 426 aaKnown RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 ABHD16AO95870 558 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 F12P00748 615 aaPredicted RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 HMGN1P05114 100 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 EPHA2P29317 976 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 FMO3P31513 532 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 EVX1P49640 407 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 PPP1CBP62140 327 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 PTGES3Q15185 160 aaKnown RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 RSPO1Q2MKA7 263 aaPredicted RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 ZFP1Q6P2D0 407 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 PLBD1Q6P4A8 553 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 DNM1P46Q6ZS02 220 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 OR2AJ1Q8NGZ0 328 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 MARS2Q96GW9 593 aaKnown RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 MAP6Q96JE9 813 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 OR2J1Q9GZK6 312 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 OR51V1Q9H2C8 321 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 PNRC2Q9NPJ4 139 aaKnown RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 HINT3Q9NQE9 182 aaKnown RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 TVP23BQ9NYZ1 205 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 TAAR3PQ9P1P4 343 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 TMEFF2Q9UIK5 374 aaPredicted RBP13.04□□□□□ -0.32
LIG1-219ENST00000600055 COMMD3-BMI1R4GMX3 469 aa13.04□□□□□ -0.32
LIG1-219ENST00000600055 ITPR3Q14573 2671 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 IGLV3-9A0A075B6K5 115 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 PRR23D1E9PI22 279 aaPredicted RBP13.03□□□□□ -0.32
LIG1-219ENST00000600055 M0R129 80 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 M0R233 179 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 ZNF593O00488 134 aaPredicted RBP13.03□□□□□ -0.32
LIG1-219ENST00000600055 ICMTO60725 284 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 PRR23D2P0DMB1 279 aaPredicted RBP13.03□□□□□ -0.32
LIG1-219ENST00000600055 NAT2P11245 290 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 KLF3P57682 345 aaPredicted RBP13.03□□□□□ -0.32
LIG1-219ENST00000600055 ESRRGP62508 458 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 CPOQ8IVL8 374 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 BBS1Q8NFJ9 593 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 OR10S1Q8NGN2 331 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 IPCEF1Q8WWN9 437 aaPredicted RBP13.03□□□□□ -0.32
LIG1-219ENST00000600055 GTF3AQ92664 365 aaKnown RBP13.03□□□□□ -0.32
LIG1-219ENST00000600055 PITX2Q99697 317 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 COQ7Q99807 217 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 CIB1Q99828 191 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 SMR3AQ99954 134 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 HDHD2Q9H0R4 259 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 RAB1BQ9H0U4 201 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 ELOVL3Q9HB03 270 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 KCNG2Q9UJ96 466 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 STARD10Q9Y365 291 aa13.03□□□□□ -0.32
LIG1-219ENST00000600055 MAP1AP78559 2803 aaPredicted RBP13.02□□□□□ -0.33
LIG1-219ENST00000600055 IGHV4-30-2A0A087WSY4 118 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms