RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DBPQ10586 325 aaPredicted RBP12.92□□□□□ -0.34
UPF1-202ENST00000594243 ZNF718Q3SXZ3 478 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 KDM4DQ6B0I6 523 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 SLC18B1Q6NT16 456 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 ICA1LQ8NDH6 482 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 OR51L1Q8NGJ5 315 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 ZNRF4Q8WWF5 429 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 IPCEF1Q8WWN9 437 aaPredicted RBP12.92□□□□□ -0.34
UPF1-202ENST00000594243 OTULINQ96BN8 352 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 PLEKHA8Q96JA3 519 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 DCLRE1CQ96SD1 692 aaKnown RBP12.92□□□□□ -0.34
UPF1-202ENST00000594243 COQ7Q99807 217 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 SYT3Q9BQG1 590 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 OSBPL10Q9BXB5 764 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 HDHD2Q9H0R4 259 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 DYNLRB1Q9NP97 96 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 TUBG2Q9NRH3 451 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 TBCCD1Q9NVR7 557 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 MRPL22Q9NWU5 206 aaKnown RBP12.92□□□□□ -0.34
UPF1-202ENST00000594243 CYB5R1Q9UHQ9 305 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 ABHD16AO95870 558 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 GYPBP06028 91 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 GCH1P30793 250 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 GGT2P36268 569 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 KLF3P57682 345 aaPredicted RBP12.91□□□□□ -0.34
UPF1-202ENST00000594243 DSCR9P59020 149 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 ECH1Q13011 328 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 PTGES3Q15185 160 aaKnown RBP12.91□□□□□ -0.34
UPF1-202ENST00000594243 MSMPQ1L6U9 139 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 TMEM236Q5W0B7 351 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 CORO6Q6QEF8 472 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 LRP11Q86VZ4 500 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 LINC00346Q8IVM7 164 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 ZNF101Q8IZC7 436 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 OR6K6Q8NGW6 343 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 ABHD4Q8TB40 342 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 NEU4Q8WWR8 484 aaPredicted RBP12.91□□□□□ -0.34
UPF1-202ENST00000594243 PTP4A1Q93096 173 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 COG8Q96MW5 612 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 PITX2Q99697 317 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 PRRG3Q9BZD7 231 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 SLCO1C1Q9NYB5 712 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 FZR1Q9UM11 496 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 OAZ3Q9UMX2 235 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 GRIP1Q9Y3R0 1128 aa12.91□□□□□ -0.34
UPF1-202ENST00000594243 IGLV3-9A0A075B6K5 115 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 A0A1W2PPW3 197 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 TVP23AA6NH52 213 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 FAM183AA6NL82 134 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 H3BNX3 289 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 M0R233 179 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 GLCEO94923 617 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 ADRA2AP08913 450 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 CLUP10909 449 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 RGS6P49758 472 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 ENTPD1P49961 510 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 ERVS71-1P61550 626 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 PPP1CBP62140 327 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 SNAPC1Q16533 368 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 TEX30Q5JUR7 227 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 SLC25A40Q8TBP6 338 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 MARS2Q96GW9 593 aaKnown RBP12.9□□□□□ -0.34
UPF1-202ENST00000594243 SORCS2Q96PQ0 1159 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 PKP2Q99959 881 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 RBM4BQ9BQ04 359 aaKnown RBP12.9□□□□□ -0.34
UPF1-202ENST00000594243 RHNO1Q9BSD3 238 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 OR51V1Q9H2C8 321 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 MED20Q9H944 212 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 TVP23BQ9NYZ1 205 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 TAAR3PQ9P1P4 343 aa12.9□□□□□ -0.34
UPF1-202ENST00000594243 MAP1AP78559 2803 aaPredicted RBP12.89□□□□□ -0.35
UPF1-202ENST00000594243 CADP27708 2225 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 H3BSA7 217 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 J3QW42 95 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 ZNF593O00488 134 aaPredicted RBP12.89□□□□□ -0.35
UPF1-202ENST00000594243 PRODHO43272 600 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 CLPTM1O96005 669 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 NGFP01138 241 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 IGHV3-13P01766 116 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 MT-ND5P03915 603 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 IGFBP5P24593 272 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 GSTT1P30711 240 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 NKPD1Q17RQ9 610 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 SLC35D3Q5M8T2 416 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 LINC01590Q5TEZ4 76 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 MBNL2Q5VZF2 373 aaKnown RBP12.89□□□□□ -0.35
UPF1-202ENST00000594243 PLBD1Q6P4A8 553 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 TMEM154Q6P9G4 183 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 CLEC2AQ6UVW9 174 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 CFAP77Q6ZQR2 320 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 DNM1P46Q6ZS02 220 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 CPOQ8IVL8 374 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 ZNF511Q8NB15 262 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 OR5L1Q8NGL2 311 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 KLF14Q8TD94 323 aaPredicted RBP12.89□□□□□ -0.35
UPF1-202ENST00000594243 C18orf12Q96KH6 178 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 ATF6BQ99941 703 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 HCAR1Q9BXC0 346 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 OR2J1Q9GZK6 312 aa12.89□□□□□ -0.35
UPF1-202ENST00000594243 WDR76Q9H967 626 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms