RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 NOP16Q9Y3C1 178 aaKnown RBP8.97□□□□□ -0.97
LIG3-212ENST00000590181 LYVE1Q9Y5Y7 322 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 IGKV1D-43A0A0B4J1Z2 117 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 IGHV1-69-2A0A0G2JMI3 117 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 TNFRSF11BO00300 401 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 SOCS2O14508 198 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 DOK2O60496 412 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 LILRA1O75019 489 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 CCNB2O95067 398 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 FSTL3O95633 263 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 IGFBP1P08833 259 aaPredicted RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 CTLA4P16410 223 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 SELEP16581 610 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 KITLGP21583 273 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 GATA3P23771 443 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 CDKN2AP42771 156 aaKnown RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 ALDH3B1P43353 468 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 RASSF2P50749 326 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 MMP15P51511 669 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 DVL1P1P54792 670 aaPredicted RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 GYS2P54840 703 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 MICAQ29983 383 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 DNAL1Q4LDG9 190 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 ZNF620Q6ZNG0 422 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 RASSF6Q6ZTQ3 369 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 VASH1Q7L8A9 365 aaPredicted RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 PAQR4Q8N4S7 273 aaPredicted RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 FAM86B1Q8N7N1 296 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 OR4C15Q8NGM1 316 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 OR2T4Q8NH00 348 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 OR1F12Q8NHA8 337 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 AKR7LQ8NHP1 331 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 ABHD4Q8TB40 342 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 ITFG2Q969R8 447 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 APOBEC3DQ96AK3 386 aaPredicted RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 HAVCR1Q96D42 359 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 RAB39BQ96DA2 213 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 MSI2Q96DH6 328 aaKnown RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 TEX12Q9BXU0 123 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 DGCR6LQ9BY27 220 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 REEP1Q9H902 201 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 SAP30LQ9HAJ7 183 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 B9D1Q9UPM9 204 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 COA3Q9Y2R0 106 aaPredicted RBP8.96□□□□□ -0.98
LIG3-212ENST00000590181 CDH10Q9Y6N8 788 aa8.96□□□□□ -0.98
LIG3-212ENST00000590181 MGAM2Q2M2H8 2515 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 IGHV4-61A0A0C4DH41 118 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 ATP5HO75947 161 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 LY6HO94772 140 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 DIRAS1O95057 198 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 TGFAP01135 160 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 IFNGP01579 166 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 NAT2P11245 290 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 CCL2P13500 99 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 WNT5AP41221 380 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 HTR5AP47898 357 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 CDH15P55291 814 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 CDK5R2Q13319 367 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 OR2T5Q6IEZ7 315 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 ZNF774Q6NX45 483 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 FBXW12Q6X9E4 464 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 THSD4Q6ZMP0 1018 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 TRPM8Q7Z2W7 1104 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 LRP11Q86VZ4 500 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 ZNF101Q8IZC7 436 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 ZCCHC24Q8N2G6 241 aaKnown RBP8.95□□□□□ -0.98
LIG3-212ENST00000590181 LNX2Q8N448 690 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 OR2T29Q8NH02 315 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 SLC25A40Q8TBP6 338 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 DNAJC9Q8WXX5 260 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 SAMD8Q96LT4 415 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 SLC22A4Q9H015 551 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 SP140LQ9H930 580 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 FAM53CQ9NYF3 392 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 TAS2R1Q9NYW7 299 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 ASH2LQ9UBL3 628 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 IL19Q9UHD0 177 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 POLR1DQ9Y2S0 133 aa8.95□□□□□ -0.98
LIG3-212ENST00000590181 IGLV1-36A0A0B4J1U3 117 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 TCRBV5S2A0A599 114 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 CLDN25C9JDP6 229 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 TPD52L2O43399 206 aaKnown RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 PPIHO43447 177 aaKnown RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 RP2O75695 350 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 CLPTM1O96005 669 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 APOC1P02654 83 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 HPXP02790 462 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 HIST1H1CP16403 213 aaKnown RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 ZNF823P16415 610 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 FUT4P22083 530 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 FXYD6P3P58550 94 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 CCL8P80075 99 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 MSMPQ1L6U9 139 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 TEX30Q5JUR7 227 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 FAM120AOSQ5T036 256 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 ZNF770Q6IQ21 691 aaPredicted RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 PGBD2Q6P3X8 592 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 LEG1Q6P5S2 330 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 GLCCI1Q86VQ1 547 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 OR6V1Q8N148 313 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms