RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MRPL23Q16540 153 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 ALKBH6Q3KRA9 238 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 HSP90AB3PQ58FF7 597 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 XKR7Q5GH72 579 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 ZFP1Q6P2D0 407 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 NANOGNBQ7Z5D8 188 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 GALNT14Q96FL9 552 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 OR5B12Q96R08 314 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 SLC29A1Q99808 456 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 ILKAPQ9H0C8 392 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 HYOU1Q9Y4L1 999 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 USP47Q96K76 1375 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 HEATR9A2RTY3 570 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 OR6C74A6NCV1 312 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 BPY2O14599 106 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 NUPL2O15504 423 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 ANXA5P08758 320 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 CD3GP09693 182 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 ZNF806P0C7X5 589 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 ZNF24P17028 368 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 DCKP27707 260 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 GPX4P36969 197 aaPredicted RBP2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 CXCL12P48061 93 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 CSNK1EP49674 416 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 TGM3Q08188 693 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 IFT88Q13099 833 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 RCAN2Q14206 197 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 ARMC12Q5T9G4 340 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 METAP1DQ6UB28 335 aaPredicted RBP2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 SNX20Q7Z614 316 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 GATSQ8NAP1 163 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 OR2A1Q8NGT9 310 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 LILRB4Q8NHJ6 448 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 LINC01560Q8TB33 94 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 ACMSDQ8TDX5 336 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 TIMM29Q9BSF4 260 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 OR51M1Q9H341 326 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 KCNE3Q9Y6H6 103 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 CABIN1Q9Y6J0 2220 aa2.35□□□□□ -2.03
SMCHD1-204ENST00000581226 AIM2O14862 343 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 RNF13O43567 381 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 KLHL41O60662 606 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 RAB3AP20336 220 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 ACLYP53396 1101 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 CDH6P55285 790 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 OR7A5Q15622 319 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 CDKL3Q8IVW4 592 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 WDFY1Q8IWB7 410 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 PRELID2Q8N945 189 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 KIFAP3Q92845 792 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 PTX4Q96A99 478 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 DNAJC1Q96KC8 554 aaKnown RBP2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 ZNF488Q96MN9 340 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 PANX1Q96RD7 426 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 SULT4A1Q9BR01 284 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 TMEM9BQ9NQ34 198 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 UXTQ9UBK9 157 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 TSSC4Q9Y5U2 329 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 S4R3C0 116 aa2.34□□□□□ -2.03
SMCHD1-204ENST00000581226 PCM1Q15154 2024 aa2.34□□□□□ -2.04
SMCHD1-204ENST00000581226 IGLV1-36A0A0B4J1U3 117 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 IGHV1OR15-9A0A0B4J2B8 117 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 CTAGE15A4D2H0 777 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 SMCO2A6NFE2 343 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 A8MUU9 505 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 L7N2F9 121 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 EIF3HO15372 352 aaKnown RBP eCLIP2.33□□□□□ -2.042e-6■■■■■ 27.8
SMCHD1-204ENST00000581226 CHST1O43916 411 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 RDH16O75452 317 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 CTAG2O75638 210 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 CIB2O75838 187 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 ACSM4P0C7M7 580 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 RNASE2P10153 161 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 KIR3DL2P43630 455 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 HCAR3P49019 387 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 P2RX1P51575 399 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 QPRTQ15274 297 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 PPM1LQ5SGD2 360 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 AP1ARQ63HQ0 302 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC8B1Q6J4K2 584 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 TMEM220Q6QAJ8 160 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 TMEM150AQ86TG1 271 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 CTAGE6Q86UF2 777 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 OR7G2Q8NG99 324 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 CIRBP-AS1Q8TBR5 109 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 LRRC29Q8WV35 223 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 RTN4IP1Q8WWV3 396 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 MICU1Q9BPX6 476 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 CENPKQ9BS16 269 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 ZNF717Q9BY31 904 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 OR52D1Q9H346 318 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 EDA2RQ9HAV5 297 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 FBXO6Q9NRD1 293 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 HRASLS2Q9NWW9 162 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 LGALS13Q9UHV8 139 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 VANGL2Q9ULK5 521 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 AKNAQ7Z591 1439 aa2.33□□□□□ -2.04
SMCHD1-204ENST00000581226 DOCK9Q9BZ29 2069 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 K7EM74 188 aa2.32□□□□□ -2.04
SMCHD1-204ENST00000581226 SOCS1O15524 211 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms