RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 NID2Q14112 1375 aa2.6□□□□□ -1.99
SMCHD1-202ENST00000577300 DHX57Q6P158 1386 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-202ENST00000577300 NCOA1Q15788 1441 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 LMTK2Q8IWU2 1503 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 DNMBPQ6XZF7 1577 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 A0A1W2PNV4 684 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 LINC00862A6NCI5 91 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 LRCOL1A6NCL2 159 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 A6NIZ1 184 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SERPINE3A8MV23 424 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 EI24O14681 340 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ARPC3O15145 178 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 STX7O15400 261 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 DLEU1O43261 78 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 B4GALT5O43286 388 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 HUS1O60921 280 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ZNF324O75467 553 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SRP72O76094 671 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 MBD3O95983 291 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 CXCL10P02778 98 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ZNF18P17022 549 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 HLA-DMAP28067 261 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 DLSTP36957 453 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 RBMXP38159 391 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 MAGEA2P43356 314 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 RPL14P50914 215 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 CCR6P51684 374 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 LSM6P62312 80 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 IL5RAQ01344 420 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 PUDPQ08623 228 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SELPLGQ14242 412 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ITIH4Q14624 930 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 CHI3L2Q15782 390 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 GRK1Q15835 563 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 C18orf21Q32NC0 220 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 BSXQ3C1V8 233 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 UBE2UQ5VVX9 321 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 NANOGP8Q6NSW7 305 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 REEP3Q6NUK4 255 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 UFSP1Q6NVU6 142 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 FAHD2BQ6P2I3 314 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 FAM199XQ6PEV8 388 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 BTNL3Q6UXE8 466 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 LRRN1Q6UXK5 716 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 HSDL2Q6YN16 418 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SLC16A14Q7RTX9 510 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 MRPL21Q7Z2W9 205 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 HDDC2Q7Z4H3 204 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TMEM126BQ8IUX1 230 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 NRMQ8IXM6 262 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 HS3ST5Q8IZT8 346 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TMEM156Q8N614 296 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 OR9K2Q8NGE7 335 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 OR52B4Q8NGK2 314 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 OR10T2Q8NGX3 314 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 DNAJB3Q8WWF6 145 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 OSTF1Q92882 214 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 HGDQ93099 445 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SLC38A4Q969I6 547 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 MCUR1Q96AQ8 359 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 DCPSQ96C86 337 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 FAHD2AQ96GK7 314 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SH3YL1Q96HL8 342 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 C4orf36Q96KX1 117 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TMEM56Q96MV1 263 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 RNF2Q99496 336 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 NIPSNAP1Q9BPW8 284 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 SLC30A2Q9BRI3 323 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TMEM109Q9BVC6 243 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TMED9Q9BVK6 235 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 GGACTQ9BVM4 153 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 PKIBQ9C010 78 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 IL22Q9GZX6 179 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ZNF430Q9H8G1 570 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ZNF160Q9HCG1 818 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ABCB9Q9NP78 766 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 NIT2Q9NQR4 276 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 FBXO8Q9NRD0 319 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 CHRAC1Q9NRG0 131 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 YAE1D1Q9NRH1 226 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 DDX19AQ9NUU7 478 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TAS2R9Q9NYW1 312 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 GLTPQ9NZD2 209 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 CD274Q9NZQ7 290 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 LEF1Q9UJU2 399 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 ALG5Q9Y673 324 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 TMEM56-RWDD3S4R434 201 aa2.59□□□□□ -1.99
SMCHD1-202ENST00000577300 MROH7Q68CQ1 1323 aa2.59□□□□□ -2
SMCHD1-202ENST00000577300 RTL1A6NKG5 1358 aa2.59□□□□□ -2
SMCHD1-202ENST00000577300 ERCC6Q03468 1493 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 TRBV2A0A0J9YWF9 115 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 PP2D1A8MPX8 630 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 MKRN2OSH3BPM6 223 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 K7EP13 123 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 KPNA4O00629 521 aaPredicted RBP2.58□□□□□ -2
SMCHD1-202ENST00000577300 DLGAP1O14490 977 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 SIVA1O15304 175 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 CFLARO15519 480 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 ZNF208O43345 1280 aa2.58□□□□□ -2
SMCHD1-202ENST00000577300 DUX1O43812 170 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms