RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PRRG3Q9BZD7 231 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 ROGDIQ9GZN7 287 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 NMUR2Q9GZQ4 415 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 ILKAPQ9H0C8 392 aaPredicted RBP3.56□□□□□ -1.84
NUP88-213ENST00000576862 ANKRA2Q9H9E1 313 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 NHEJ1Q9H9Q4 299 aaPredicted RBP3.56□□□□□ -1.84
NUP88-213ENST00000576862 MCCC2Q9HCC0 563 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 DUS2Q9NX74 493 aaKnown RBP3.56□□□□□ -1.84
NUP88-213ENST00000576862 SLC17A7Q9P2U7 560 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 EXOSC1Q9Y3B2 195 aaKnown RBP3.56□□□□□ -1.84
NUP88-213ENST00000576862 CACNG2Q9Y698 323 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 RLFQ13129 1914 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 A0A0G2JMZ2 1700 aa3.56□□□□□ -1.84
NUP88-213ENST00000576862 TDRD6O60522 2096 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 UTRNP46939 3433 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 WI2-2373I1.2A0A1W2PRP0 233 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 RNF222A6NCQ9 220 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 FAM231BA6NCW3 169 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 GOLGA6L10A6NI86 522 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 E5RI56 91 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 RNASEK-C17orf49H0YIS7 233 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 PGRMC1O00264 195 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 SDHDO14521 159 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TOR1AO14656 332 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SCAMP2O15127 329 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 TM9SF1O15321 606 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 EIF3HO15372 352 aaKnown RBP eCLIP3.55□□□□□ -1.84
NUP88-213ENST00000576862 FAM189A1O60320 539 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 RAMP1O60894 148 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 GPX5O75715 221 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TM7SF2O76062 418 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 NDUFA7O95182 113 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SNAPINO95295 136 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 RAB3DO95716 219 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 FADS2O95864 444 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 CST1P01037 141 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 LGALS2P05162 132 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SLC35G4P0C7Q5 338 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 ZNF286BP0CG31 522 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SMIM10L1P0DMW3 83 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 MGMTP16455 207 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 ATF6P18850 670 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TPSB2P20231 275 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 UQCRC2P22695 453 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CYLC1P35663 651 aaPredicted RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 ACTR1BP42025 376 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CRYBB2P43320 205 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TPMTP51580 245 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 PLK1P53350 603 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 DIO3P55073 304 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 RAB4BP61018 213 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SNRPFP62306 86 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 ARF6P62330 175 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 HERVK_113P63132 956 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 ERVK-8P63133 956 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 IL9RQ01113 521 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 IRF8Q02556 426 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SRYQ05066 204 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CHRNB3Q05901 458 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CYP24A1Q07973 514 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 LAMTOR4Q0VGL1 99 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TPSAB1Q15661 275 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 MICBQ29980 383 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CCDC153Q494R4 210 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 MARCH8Q5T0T0 291 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 LCE3AQ5TA76 89 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 ZNF571Q7Z3V5 609 aaPredicted RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 LHFPL4Q7Z7J7 247 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SLC51BQ86UW2 128 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SLC13A5Q86YT5 568 aaPredicted RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 MFSD6LQ8IWD5 586 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CLEC4FQ8N1N0 589 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CSNK1A1LQ8N752 337 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 C14orf178Q8N769 122 aaPredicted RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 CCNYL1Q8N7R7 359 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 OR10H4Q8NGA5 316 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 PPTC7Q8NI37 304 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 GTF2H4Q92759 462 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SMARCD2Q92925 531 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SMIM10Q96HG1 83 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 AKR1E2Q96JD6 320 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CCDC42Q96M95 316 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 CTRCQ99895 268 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 HINT2Q9BX68 163 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 ERVK-6Q9BXR3 956 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TOLLIPQ9H0E2 274 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 SLC38A1Q9H2H9 487 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 NARFLQ9H6Q4 476 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 TRIM45Q9H8W5 580 aaPredicted RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 ELOVL3Q9HB03 270 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 LYARQ9NX58 379 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 GHRLQ9UBU3 117 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 PAIP2BQ9ULR5 123 aaKnown RBP3.55□□□□□ -1.84
NUP88-213ENST00000576862 RPH3ALQ9UNE2 315 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 FLVCR2Q9UPI3 526 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 PDE10AQ9Y233 779 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 V9GYQ6 96 aa3.55□□□□□ -1.84
NUP88-213ENST00000576862 OTOFQ9HC10 1997 aa3.54□□□□□ -1.84
NUP88-213ENST00000576862 PHIPQ8WWQ0 1821 aa3.54□□□□□ -1.84
NUP88-213ENST00000576862 LOC285556D6RIA3 1793 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms