RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ARSJQ5FYB0 599 aaPredicted RBP13□□□□□ -0.33
VPS53-218ENST00000575207 CFAP157Q5JU67 520 aa13□□□□□ -0.33
VPS53-218ENST00000575207 NCR3LG1Q68D85 454 aa13□□□□□ -0.33
VPS53-218ENST00000575207 OR4F3Q6IEY1 312 aa13□□□□□ -0.33
VPS53-218ENST00000575207 ALDH16A1Q8IZ83 802 aa13□□□□□ -0.33
VPS53-218ENST00000575207 OR5AS1Q8N127 324 aa13□□□□□ -0.33
VPS53-218ENST00000575207 CLIP4Q8N3C7 705 aa13□□□□□ -0.33
VPS53-218ENST00000575207 KRTAP4-5Q9BYR2 181 aa13□□□□□ -0.33
VPS53-218ENST00000575207 KCNK9Q9NPC2 374 aa13□□□□□ -0.33
VPS53-218ENST00000575207 RPS6KB2Q9UBS0 482 aa13□□□□□ -0.33
VPS53-218ENST00000575207 GIMAP2Q9UG22 337 aa13□□□□□ -0.33
VPS53-218ENST00000575207 SORL1Q92673 2214 aa13□□□□□ -0.33
VPS53-218ENST00000575207 C11orf98E9PRG8 122 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 F5H5P2 479 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 AZIN1O14977 448 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 MLNRO43193 412 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 CHEK2O96017 543 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 NR2F1P10589 423 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 PAICSP22234 425 aaKnown RBP12.99□□□□□ -0.33
VPS53-218ENST00000575207 HTR5AP47898 357 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 HOXA4Q00056 320 aaPredicted RBP12.99□□□□□ -0.33
VPS53-218ENST00000575207 HOXC5Q00444 222 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 HIST3H3Q16695 136 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 NXNQ6DKJ4 435 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 SFRP4Q6FHJ7 346 aaPredicted RBP12.99□□□□□ -0.33
VPS53-218ENST00000575207 OVCH2Q7RTZ1 564 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 CENPVQ7Z7K6 275 aaPredicted RBP12.99□□□□□ -0.33
VPS53-218ENST00000575207 LCA5Q86VQ0 697 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 OR8G5Q8NG78 346 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 OR11L1Q8NGX0 322 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 PTP4A1Q93096 173 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 MCHR2Q969V1 340 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 TEX37Q96LM6 180 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 MOGAT1Q96PD6 335 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 PAFAH2Q99487 392 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 C1orf50Q9BV19 199 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 SPATA9Q9BWV2 254 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 WNT5BQ9H1J7 359 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 RMND5AQ9H871 391 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 KAAG1Q9UBP8 84 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 TCF19Q9Y242 345 aa12.99□□□□□ -0.33
VPS53-218ENST00000575207 ZNF443Q9Y2A4 671 aaPredicted RBP12.99□□□□□ -0.33
VPS53-218ENST00000575207 FAM20BO75063 409 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 FRMD6-AS1P0C7T7 363 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 ADORA3P0DMS8 318 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 PAX6P26367 422 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 BLCAPP62952 87 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 ERVK-25P63136 954 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 MRPS34P82930 218 aaKnown RBP12.98□□□□□ -0.33
VPS53-218ENST00000575207 MELKQ14680 651 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 NUDCD3Q8IVD9 361 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 SLC35F6Q8N357 371 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 OR4X2Q8NGF9 303 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 ST8SIA4Q92187 359 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 P2RX4Q99571 388 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 EPYCQ99645 322 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 OR2H1Q9GZK4 316 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 TRIM36Q9NQ86 728 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 ZNF256Q9Y2P7 627 aaPredicted RBP12.98□□□□□ -0.33
VPS53-218ENST00000575207 DNAJC15Q9Y5T4 150 aa12.98□□□□□ -0.33
VPS53-218ENST00000575207 A0A1B0GWJ7 208 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 WDR91A4D1P6 747 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 VGLL3A8MV65 326 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 PEX11AO75192 247 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 CPSF4O95639 269 aaKnown RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 IGHG1P01857 330 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 C1QCP02747 245 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 MED14OSP0DP75 135 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 RAC2P15153 192 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 TCP1P17987 556 aaKnown RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 CDAP32320 146 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 MYCNOSP40205 109 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 LUMP51884 338 aaPredicted RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 CLRN1P58418 232 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 CAV1Q03135 178 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 PDCD4Q53EL6 469 aaKnown RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 KHDC1LQ5JSQ8 128 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 ANKRD46Q86W74 232 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 LRRC34Q8IZ02 419 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 C10orf53Q8N6V4 93 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 CELF2-AS1Q8N7Q2 184 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 NABP1Q96AH0 204 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 PPP3R2Q96LZ3 170 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 ZNF583Q96ND8 569 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 ZNF347Q96SE7 839 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 NAPGQ99747 312 aaPredicted RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 ARMC7Q9H6L4 198 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 PPP2R2CQ9Y2T4 447 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 STARD10Q9Y365 291 aa12.97□□□□□ -0.33
VPS53-218ENST00000575207 SF3B6Q9Y3B4 125 aaKnown RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 DYNC1H1Q14204 4646 aaKnown RBP12.97□□□□□ -0.33
VPS53-218ENST00000575207 TRAV38-1A0A0B4J264 116 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 A6NDX4 124 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 LRRN3E7EW58 273 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 ZNF133P52736 654 aaPredicted RBP12.96□□□□□ -0.33
VPS53-218ENST00000575207 RAD23AP54725 363 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 MAB21L1Q13394 359 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 ALG10BQ5I7T1 473 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 HCP5Q6MZN7 132 aa12.96□□□□□ -0.33
VPS53-218ENST00000575207 FGFRL1Q8N441 504 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms