RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TGFBR3Q03167 851 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 SLC3A1Q07837 685 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 SCRN3Q0VDG4 424 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 ALKBH1Q13686 389 aaKnown RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 CCDC92Q53HC0 331 aaPredicted RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 OR7E24Q6IFN5 339 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 ANKRD16Q6P6B7 361 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 Q6ZT83 130 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 MED12LQ86YW9 2145 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 RPRMLQ8N4K4 120 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 MS4A15Q8N5U1 240 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 OR1K1Q8NGR3 316 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 RPL3LQ92901 407 aaKnown RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 TMEM203Q969S6 136 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 SMIM19Q96E16 107 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 CHCHD6Q9BRQ6 235 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 TMED9Q9BVK6 235 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 SFXN3Q9BWM7 321 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 PNRC2Q9NPJ4 139 aaKnown RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 SSR3Q9UNL2 185 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 R4GMQ9 66 aa12□□□□□ -0.49
CCDC40-209ENST00000573474 MAP1BP46821 2468 aaKnown RBP12□□□□□ -0.49
CCDC40-209ENST00000573474 SVILO95425 2214 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 ACACBO00763 2458 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 LOC100506127A0A0U1RQW1 187 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 TRDV1A0A1B0GX56 115 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 SLC22A1O15245 554 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 GPRIN2O60269 458 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 IL18BPO95998 194 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 HLA-DPB1P04440 258 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 ITGA5P08648 1049 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CD8BP10966 210 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 GALP22466 123 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 HSD11B1P28845 292 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 GDI2P50395 445 aaKnown RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CCR9P51686 369 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CASP6P55212 293 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 NANOS3P60323 173 aaKnown RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 LSM3P62310 102 aaKnown RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 PMPCAQ10713 525 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 ECH1Q13011 328 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CNPY1Q3B7I2 92 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF829Q3KNS6 432 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 SLC36A2Q495M3 483 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 ELFN2Q5R3F8 820 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CD200R1LQ6Q8B3 271 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 DPPA2Q7Z7J5 298 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 NAXEQ8NCW5 288 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 OR2G2Q8NGZ5 317 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 BCL2L2Q92843 193 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 GHSRQ92847 366 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 PGLYRP3Q96LB9 341 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CNTNAP3BQ96NU0 1288 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 COQ7Q99807 217 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 CNTNAP3Q9BZ76 1288 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 EXOSC4Q9NPD3 245 aaKnown RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 DDX28Q9NUL7 540 aaKnown RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 PLEK2Q9NYT0 353 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 FRRS1LQ9P0K9 344 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 TINAGQ9UJW2 476 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 BSNQ9UPA5 3926 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 PHF3Q92576 2039 aaKnown RBP11.99□□□□□ -0.49
CCDC40-209ENST00000573474 PKD1L2Q7Z442 2459 aa11.99□□□□□ -0.49
CCDC40-209ENST00000573474 A0A096LPE4 126 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 TMEM269A0A1B0GVZ9 245 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 A0A1W2PPZ6 126 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 TRIM64BA6NI03 449 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 LRRTM2O43300 516 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 SGCEO43556 437 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 SRSF10O75494 262 aaKnown RBP11.98□□□□□ -0.49
CCDC40-209ENST00000573474 MMP7P09237 267 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF32P17041 273 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 IGHV1-2P23083 117 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 OPRM1P35372 400 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 MMP16P51512 607 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 FABP5Q01469 135 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 RAB35Q15286 201 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 TMEM211Q6ICI0 200 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 BEND4Q6ZU67 534 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 CATSPERDQ86XM0 798 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 CCDC36Q8IYA8 594 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF610Q8N9Z0 462 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 OR5AK2Q8NH90 309 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 FGFBP3Q8TAT2 258 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 ABHD4Q8TB40 342 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 HSD17B8Q92506 261 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 C4orf45Q96LM5 186 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 KCNJ15Q99712 375 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 ATF6BQ99941 703 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 OR2H1Q9GZK4 316 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 HDHD2Q9H0R4 259 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 RNF121Q9H920 327 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 FBXL3Q9UKT7 428 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 SLC5A6Q9Y289 635 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 ZNF281Q9Y2X9 895 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 DOCK7Q96N67 2140 aa11.98□□□□□ -0.49
CCDC40-209ENST00000573474 ITPR1Q14643 2758 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 CIB4A0PJX0 185 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 ACOD1A6NK06 481 aa11.97□□□□□ -0.49
CCDC40-209ENST00000573474 TMEM212A6NML5 194 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms