RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ABHD16AO95870 558 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 HLA-DQA2P01906 255 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 T-ENOLP0DO92 83 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 RAP2AP10114 183 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 NAT2P11245 290 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 ZNF250P15622 560 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 HOXB6P17509 224 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 GSTM3P21266 225 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 CHN2P52757 468 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 ERVS71-1P61550 626 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 LSM6P62312 80 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 TEKQ02763 1124 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 GLO1Q04760 184 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 TRAP1Q12931 704 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 MSMPQ1L6U9 139 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 ZMAT1Q5H9K5 638 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 CLEC12AQ5QGZ9 265 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 OR2T5Q6IEZ7 315 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 UGT2A3Q6UWM9 527 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 ZNF620Q6ZNG0 422 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 ZCCHC24Q8N2G6 241 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 AQP11Q8NBQ7 271 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 OR9Q2Q8NGE9 314 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 OR2T29Q8NH02 315 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 OR4K13Q8NH42 304 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 SLC25A40Q8TBP6 338 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 WFDC12Q8WWY7 111 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 RDH5Q92781 318 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 C4orf45Q96LM5 186 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 SNX18Q96RF0 628 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 NMNAT3Q96T66 252 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 GPA33Q99795 319 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 CDADC1Q9BWV3 514 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 BPESC1Q9GZL8 116 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 NUAK2Q9H093 628 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 RACGAP1Q9H0H5 632 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 YY1AP1Q9H869 796 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 CHODLQ9H9P2 273 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 SRA1Q9HD15 236 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 CYSLTR2Q9NS75 346 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 DECR2Q9NUI1 292 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 PLEK2Q9NYT0 353 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 TAS2R1Q9NYW7 299 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 MYEF2Q9P2K5 600 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 CGGBP1Q9UFW8 167 aaPredicted RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 B9D1Q9UPM9 204 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 SAMHD1Q9Y3Z3 626 aaKnown RBP6.94□□□□□ -1.3
VPS53-214ENST00000572607 NBEAL1Q6ZS30 2694 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 CR1P17927 2039 aa6.94□□□□□ -1.3
VPS53-214ENST00000572607 LOC100509620A0A075B734 347 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 A0A096LNT2 108 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 DHRS12A0PJE2 317 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 AQP12BA6NM10 295 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 VWC2LB2RUY7 222 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 UBOX5O94941 541 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 CLPTM1O96005 669 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 HPXP02790 462 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 HIST1H1CP16403 213 aaKnown RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 ZNF823P16415 610 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 ZNF16P17020 682 aaPredicted RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 ZNF23P17027 643 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 ACHEP22303 614 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 TUBG1P23258 451 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 GIFP27352 417 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 LIPAP38571 399 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 WNT5AP41221 380 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 CDKN2AP42771 156 aaKnown RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 GPR6P46095 362 aaPredicted RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 RGS6P49758 472 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 ZNF81P51508 661 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 HMGA2P52926 109 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 FXYD6P3P58550 94 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 PPP1CBP62140 327 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 MRPS11P82912 194 aaKnown RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 MS4A2Q01362 244 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 KRTAP1-1Q07627 177 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS53-214ENST00000572607 FLOT2Q14254 428 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 MICAQ29983 383 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 FAM209AQ5JX71 171 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 SPATA46Q5T0L3 261 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 SLC35F1Q5T1Q4 408 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 C6orf52Q5T4I8 152 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 LCE3BQ5TA77 95 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 RASSF6Q6ZTQ3 369 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 PTCHD4Q6ZW05 846 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 RFPL4BQ6ZWI9 263 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 SPATA24Q86W54 205 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 AQP12AQ8IXF9 295 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 ZNF101Q8IZC7 436 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 SDR9C7Q8NEX9 313 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 GJC3Q8NFK1 279 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 OR10G2Q8NGC3 310 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 OR52E2Q8NGJ4 325 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 OR4C15Q8NGM1 316 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 OR2AJ1Q8NGZ0 328 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 OR1F12Q8NHA8 337 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 IPCEF1Q8WWN9 437 aaPredicted RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 CLPTM1LQ96KA5 538 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms