RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 NKPD1Q17RQ9 610 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 RABL3Q5HYI8 236 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 PABPC1L2AQ5JQF8 200 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 LPCAT4Q643R3 524 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 REP15Q6BDI9 236 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 NANOGP8Q6NSW7 305 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 SLC25A47Q6Q0C1 308 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 THSD4Q6ZMP0 1018 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 FOXL2NBQ6ZUU3 175 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 RFPL4BQ6ZWI9 263 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 USP51Q70EK9 711 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 USP43Q70EL4 1123 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 SLC16A14Q7RTX9 510 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 C1QL2Q7Z5L3 287 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 ZDHHC22Q8N966 263 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 RP9Q8TA86 221 aaKnown RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 TSPEARQ8WU66 669 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 CHAC2Q8WUX2 184 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 TMEM255BQ8WV15 326 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 PYDC1Q8WXC3 89 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 ZNF583Q96ND8 569 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 ANKRD60Q9BZ19 345 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 BCL2L14Q9BZR8 327 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 MARCH7Q9H992 704 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 EFCAB1Q9HAE3 211 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 CDH20Q9HBT6 801 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 GMPR2Q9P2T1 348 aaKnown RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 ATPIF1Q9UII2 106 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 WIPI2Q9Y4P8 454 aa5.7□□□□□ -1.5
VPS53-213ENST00000572334 PRKDCP78527 4128 aaKnown RBP5.7□□□□□ -1.5
VPS53-213ENST00000572334 NPIPB13A6NJU9 1138 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 NPIPB4C9JG80 1138 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 PIP5K1CO60331 668 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ICMTO60725 284 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ALX3O95076 343 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 OR5F1O95221 314 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 MPZL1O95297 269 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 FARS2O95363 451 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 CRYZL1O95825 349 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 NGFP01138 241 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ADH4P08319 380 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ZNF26P17031 533 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 EPHA1P21709 976 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 PCMT1P22061 227 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ZFP36P26651 326 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 STOMP27105 288 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 RBM34P42696 430 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 RAD52P43351 418 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 OR1E2P47887 323 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 CLRN1P58418 232 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 TOP3AQ13472 1001 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 NFYCQ13952 458 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ENDOGQ14249 297 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 OXA1LQ15070 435 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 TSTQ16762 297 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 DGUOKQ16854 277 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 LRRC36Q1X8D7 754 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 TBC1D28Q2M2D7 210 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 PCGF3Q3KNV8 242 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 SLC36A2Q495M3 483 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 SPATA46Q5T0L3 261 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 THEM4Q5T1C6 240 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 FAM27BQ5VT28 67 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 MBNL2Q5VZF2 373 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 SIGIRRQ6IA17 410 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 ACSM5Q6NUN0 579 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 FAHD2BQ6P2I3 314 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 C12orf54Q6X4T0 127 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 DPPA2Q7Z7J5 298 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 PEG10Q86TG7 708 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 SLC30A8Q8IWU4 369 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 DEFB107AQ8IZN7 70 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 PGAM4Q8N0Y7 254 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 OR1J1Q8NGS3 322 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 AKR7LQ8NHP1 331 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 SLC25A40Q8TBP6 338 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 TBC1D15Q8TC07 691 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 KLF14Q8TD94 323 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 FAM216AQ8WUB2 273 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 TMEM239Q8WW34 195 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 IPCEF1Q8WWN9 437 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 C11orf40Q8WZ69 217 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 DVL3Q92997 716 aaPredicted RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 C12orf43Q96C57 262 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 SGTBQ96EQ0 304 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 DUS3LQ96G46 650 aaKnown RBP5.69□□□□□ -1.5
VPS53-213ENST00000572334 FAHD2AQ96GK7 314 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 C9orf16Q9BUW7 83 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 OR2J1Q9GZK6 312 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 WNT5BQ9H1J7 359 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 TXNIPQ9H3M7 391 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 MUC13Q9H3R2 512 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 C1orf198Q9H425 327 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 POFUT1Q9H488 388 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 SLA2Q9H6Q3 261 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 RNF121Q9H920 327 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 SIAEQ9HAT2 523 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 MAN2C1Q9NTJ4 1040 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 SLCO1C1Q9NYB5 712 aa5.69□□□□□ -1.5
VPS53-213ENST00000572334 RIMS3Q9UJD0 308 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms