RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NDEL1Q9GZM8 345 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 TPK1Q9H3S4 243 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 MRPL22Q9NWU5 206 aaKnown RBP11.92□□□□□ -0.5
CLN3-235ENST00000568497 STX18Q9P2W9 335 aaKnown RBP11.92□□□□□ -0.5
CLN3-235ENST00000568497 ASH2LQ9UBL3 628 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 TENM1Q9UKZ4 2725 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 C5orf49A4QMS7 147 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 ARPC3O15145 178 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 NGFP01138 241 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 HLA-DQA2P01906 255 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 ZNF23P17027 643 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 FASP25445 335 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 SRP14P37108 136 aaKnown RBP11.91□□□□□ -0.5
CLN3-235ENST00000568497 ALDH3B1P43353 468 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 GGTLC2Q14390 218 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 RAB35Q15286 201 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 CCDC92Q53HC0 331 aaPredicted RBP11.91□□□□□ -0.5
CLN3-235ENST00000568497 AGAP6Q5VW22 663 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 CFAP77Q6ZQR2 320 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 RFPL4BQ6ZWI9 263 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 ADCK1Q86TW2 530 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 GLB1L2Q8IW92 636 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 ZNF101Q8IZC7 436 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 PROKR2Q8NFJ6 384 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 OR5K1Q8NHB7 308 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 TEX47Q8TBZ9 253 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 WDR76Q9H967 626 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 CDH20Q9HBT6 801 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 KIF17Q9P2E2 1029 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 POLR1DQ9Y2S0 133 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 LHFPL6Q9Y693 200 aa11.91□□□□□ -0.5
CLN3-235ENST00000568497 C5orf63A6NC05 138 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 DOK2O60496 412 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 DEAF1O75398 565 aaPredicted RBP11.9□□□□□ -0.5
CLN3-235ENST00000568497 CST2P09228 141 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 NPR2P20594 1047 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 NR4A1P22736 598 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 STOMP27105 288 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 APOBEC3AP31941 199 aaPredicted RBP11.9□□□□□ -0.5
CLN3-235ENST00000568497 SERPINF1P36955 418 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 MPV17P39210 176 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 HTR5AP47898 357 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 ACTR3P61158 418 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 TEKQ02763 1124 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 CR1LQ2VPA4 569 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 LNX2Q8N448 690 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 OR2T33Q8NG76 320 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 MSI2Q96DH6 328 aaKnown RBP11.9□□□□□ -0.5
CLN3-235ENST00000568497 POM121L2Q96KW2 1035 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 VRK1Q99986 396 aaPredicted RBP11.9□□□□□ -0.5
CLN3-235ENST00000568497 OR51V1Q9H2C8 321 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 KCNN2Q9H2S1 579 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 MMADHCQ9H3L0 296 aaPredicted RBP11.9□□□□□ -0.5
CLN3-235ENST00000568497 OCEL1Q9H607 264 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 YY1AP1Q9H869 796 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 CBLN4Q9NTU7 201 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 DUSP13Q9UII6 198 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 OAZ3Q9UMX2 235 aa11.9□□□□□ -0.5
CLN3-235ENST00000568497 IQCMA0A1B0GVH7 501 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 ERICH4A6NGS2 130 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 LYNX1G3V0Z9 82 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 G3V2T6 193 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 LCKP06239 509 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 LYNX1P0DP58 116 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 OSMP13725 252 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 APEHP13798 732 aaKnown RBP11.89□□□□□ -0.51
CLN3-235ENST00000568497 GSTM3P21266 225 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 APLNRP35414 380 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 SWI5Q1ZZU3 235 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 PLBD1Q6P4A8 553 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 FAHD1Q6P587 224 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 VASH1Q7L8A9 365 aaPredicted RBP11.89□□□□□ -0.51
CLN3-235ENST00000568497 NAA40Q86UY6 237 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 CCDC36Q8IYA8 594 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 LINC00471Q8N535 108 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 FAM169BQ8N8A8 192 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 SLC26A10Q8NG04 563 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 OR6K6Q8NGW6 343 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 C10orf105Q8TEF2 133 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 SORCS2Q96PQ0 1159 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 RBM4Q9BWF3 364 aaKnown RBP11.89□□□□□ -0.51
CLN3-235ENST00000568497 HINT3Q9NQE9 182 aaKnown RBP11.89□□□□□ -0.51
CLN3-235ENST00000568497 PAPOLBQ9NRJ5 636 aaKnown RBP11.89□□□□□ -0.51
CLN3-235ENST00000568497 PKD1L1Q8TDX9 2849 aa11.89□□□□□ -0.51
CLN3-235ENST00000568497 C12orf71A8MTZ7 269 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 TGFAP01135 160 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 ADRA2AP08913 450 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 SPARCP09486 303 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 NAT2P11245 290 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 SPI1P17947 270 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 GGT2P36268 569 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 GUCA1AP43080 201 aaPredicted RBP11.88□□□□□ -0.51
CLN3-235ENST00000568497 GDI2P50395 445 aaKnown RBP11.88□□□□□ -0.51
CLN3-235ENST00000568497 HCCSP53701 268 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 GALK2Q01415 458 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 PLP2Q04941 152 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 CARTPTQ16568 116 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 ZIK1Q3SY52 487 aaPredicted RBP11.88□□□□□ -0.51
CLN3-235ENST00000568497 CD300LDQ6UXZ3 194 aa11.88□□□□□ -0.51
CLN3-235ENST00000568497 ZBTB46Q86UZ6 589 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms