RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GTF3AQ92664 365 aaKnown RBP12.85□□□□□ -0.35
VPS39-210ENST00000568357 FEVQ99581 238 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 NIPSNAP1Q9BPW8 284 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 PIMREGQ9BSJ6 248 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 TSSK6Q9BXA6 273 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 BPESC1Q9GZL8 116 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 RACGAP1Q9H0H5 632 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 SLCO1C1Q9NYB5 712 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 PLEK2Q9NYT0 353 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 NDRG4Q9ULP0 352 aaKnown RBP12.85□□□□□ -0.35
VPS39-210ENST00000568357 LHFPL6Q9Y693 200 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 IGHV4-61A0A0C4DH41 118 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 TCRBV3S1A0A5B6 114 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 OR6C6A6NF89 314 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 CD5LO43866 347 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 SOX14O95416 240 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 GSTM3P21266 225 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 GIFP27352 417 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 MAGEB1P43366 347 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 HTR5AP47898 357 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 PPP1CBP62140 327 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 TEKQ02763 1124 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 GLO1Q04760 184 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 GGTLC2Q14390 218 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 ZNF718Q3SXZ3 478 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 MBNL2Q5VZF2 373 aaKnown RBP12.84□□□□□ -0.35
VPS39-210ENST00000568357 CORO6Q6QEF8 472 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 LNX2Q8N448 690 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 CYB561A3Q8NBI2 242 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 OR52L1Q8NGH7 329 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 OR4Q3Q8NH05 313 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 OR1F12Q8NHA8 337 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 GIPC3Q8TF64 312 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 SLCO4A1Q96BD0 722 aa12.84□□□□□ -0.35
VPS39-210ENST00000568357 HINT3Q9NQE9 182 aaKnown RBP12.84□□□□□ -0.35
VPS39-210ENST00000568357 C17orf100A8MU93 164 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 GNGT2O14610 69 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 NCR1O76036 304 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 DBHP09172 617 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 GCH1P30793 250 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 PYCR1P32322 319 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 RIN1Q13671 783 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 RSPO1Q2MKA7 263 aaPredicted RBP12.83□□□□□ -0.36
VPS39-210ENST00000568357 UNQ6126/PRO20091Q6UXV3 157 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 CD300LDQ6UXZ3 194 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 HS3ST5Q8IZT8 346 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 SLC37A3Q8NCC5 494 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 PAPD5Q8NDF8 572 aaKnown RBP12.83□□□□□ -0.36
VPS39-210ENST00000568357 GJC3Q8NFK1 279 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 IPCEF1Q8WWN9 437 aaPredicted RBP12.83□□□□□ -0.36
VPS39-210ENST00000568357 POFUT1Q9H488 388 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 ELOVL3Q9HB03 270 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 YAE1D1Q9NRH1 226 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 TBC1D23Q9NUY8 699 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 TBCCD1Q9NVR7 557 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 ARMC1Q9NVT9 282 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 MRPL22Q9NWU5 206 aaKnown RBP12.83□□□□□ -0.36
VPS39-210ENST00000568357 GPR160Q9UJ42 338 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 GRIP1Q9Y3R0 1128 aa12.83□□□□□ -0.36
VPS39-210ENST00000568357 FKBP6O75344 327 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 ABHD16AO95870 558 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 PRKACGP22612 351 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 GGT2P36268 569 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 MMP15P51511 669 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 ARHGDIAP52565 204 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 CCL8P80075 99 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 CBX1P83916 185 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 COX10Q12887 443 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 GK3PQ14409 553 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 MOGQ16653 247 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 TMEM154Q6P9G4 183 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 ARL9Q6T311 187 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 LINC00346Q8IVM7 164 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 C1orf174Q8IYL3 243 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 ZNF540Q8NDQ6 660 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 OR51L1Q8NGJ5 315 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 RDH5Q92781 318 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 YIPF5Q969M3 257 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 RBM4Q9BWF3 364 aaKnown RBP12.82□□□□□ -0.36
VPS39-210ENST00000568357 PDP1Q9P0J1 537 aaPredicted RBP12.82□□□□□ -0.36
VPS39-210ENST00000568357 KLHL21Q9UJP4 597 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 POLR1DQ9Y2S0 133 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 STARD10Q9Y365 291 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 CR1P17927 2039 aa12.82□□□□□ -0.36
VPS39-210ENST00000568357 LRP5LA4QPB2 252 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 ARRDC5A6NEK1 342 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 TLX2O43763 284 aaPredicted RBP12.81□□□□□ -0.36
VPS39-210ENST00000568357 LILRA1O75019 489 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 HLA-DQA2P01906 255 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 IGHV4-31P0DP07 118 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 HOXB6P17509 224 aaKnown RBP12.81□□□□□ -0.36
VPS39-210ENST00000568357 PSG7Q13046 419 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 CRMP1Q14194 572 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 TRIP10Q15642 601 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 SLC36A3Q495N2 470 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 CYB5R2Q6BCY4 276 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 SLC18B1Q6NT16 456 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 CFAP77Q6ZQR2 320 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 OR2T33Q8NG76 320 aa12.81□□□□□ -0.36
VPS39-210ENST00000568357 OR9Q1Q8NGQ5 310 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms