RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PTHP01270 115 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 SPARCP09486 303 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 OR4A8P0C604 315 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 ZNF823P16415 610 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 GSTT1P30711 240 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 APOBEC3AP31941 199 aaPredicted RBP16.84■□□□□ 0.29
CLN3-225ENST00000566824 CDKN1AP38936 164 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 ENTPD1P49961 510 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 APOFQ13790 326 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 RAB35Q15286 201 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 PCK2Q16822 640 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 AADACL4Q5VUY2 407 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 LRP11Q86VZ4 500 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 TIGD4Q8IY51 512 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 ALDH16A1Q8IZ83 802 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 MUC15Q8N387 334 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 GALNT4Q8N4A0 578 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 OR1F12Q8NHA8 337 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 TMEM163Q8TC26 289 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 NINJ1Q92982 152 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 ENOPH1Q9UHY7 261 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 TMEM129A0AVI4 362 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 OVOL3O00110 214 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 DEFB113Q30KQ7 82 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 ELFN2Q5R3F8 820 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 ZNF544Q6NX49 715 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 RFPL4BQ6ZWI9 263 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 ERI1Q8IV48 349 aaKnown RBP16.83■□□□□ 0.28
CLN3-225ENST00000566824 FBXL14Q8N1E6 418 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 GJC3Q8NFK1 279 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 OR1J2Q8NGS2 313 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 MBD6Q96DN6 1003 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 AMELYQ99218 206 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 CDADC1Q9BWV3 514 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 TEX12Q9BXU0 123 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 POFUT1Q9H488 388 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 AASSQ9UDR5 926 aa16.83■□□□□ 0.28
CLN3-225ENST00000566824 PRODHO43272 600 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 NDUFS7O75251 213 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 COX5BP10606 129 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 ANOS1P23352 680 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 SERPINF1P36955 418 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 NAA10P41227 235 aaPredicted RBP16.82■□□□□ 0.28
CLN3-225ENST00000566824 HCCSP53701 268 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 RAD23AP54725 363 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 UCP2P55851 309 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 GALK2Q01415 458 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 SWI5Q1ZZU3 235 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 TMEM255AQ5JRV8 349 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 TEX30Q5JUR7 227 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 DPY19L4Q7Z388 723 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 DCXRQ7Z4W1 244 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 OR2AJ1Q8NGZ0 328 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 ST7LQ8TDW4 575 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 HRASLS5Q96KN8 279 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 INTS14Q96SY0 518 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 TEAD3Q99594 435 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 PITX2Q99697 317 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 MRPL37Q9BZE1 423 aaKnown RBP16.82■□□□□ 0.28
CLN3-225ENST00000566824 ZNF442Q9H7R0 627 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 MYEF2Q9P2K5 600 aaKnown RBP16.82■□□□□ 0.28
CLN3-225ENST00000566824 KCNG2Q9UJ96 466 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 KLHDC2Q9Y2U9 406 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 ORC6Q9Y5N6 252 aa16.82■□□□□ 0.28
CLN3-225ENST00000566824 SMPD2O60906 423 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 CLPTM1O96005 669 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 GLRXP35754 106 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 RPS7P62081 194 aaKnown RBP16.81■□□□□ 0.28
CLN3-225ENST00000566824 KRTAP27-1Q3LI81 207 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 SPATA46Q5T0L3 261 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 AGAP6Q5VW22 663 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 SPATC1Q76KD6 591 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 NAA40Q86UY6 237 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 OR6N2Q8NGY6 317 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 FAM81AQ8TBF8 368 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 PIGTQ969N2 578 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 C4orf45Q96LM5 186 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 SYT3Q9BQG1 590 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 CBLN4Q9NTU7 201 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 NDRG4Q9ULP0 352 aaKnown RBP16.81■□□□□ 0.28
CLN3-225ENST00000566824 GRIP1Q9Y3R0 1128 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 ITPR3Q14573 2671 aa16.81■□□□□ 0.28
CLN3-225ENST00000566824 CASQ2O14958 399 aaPredicted RBP16.8■□□□□ 0.28
CLN3-225ENST00000566824 LCKP06239 509 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 MRPL3P09001 348 aaKnown RBP16.8■□□□□ 0.28
CLN3-225ENST00000566824 PCSK6P29122 969 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 ART1P52961 327 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 SLC35D3Q5M8T2 416 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 OGFRL1Q5TC84 451 aaPredicted RBP16.8■□□□□ 0.28
CLN3-225ENST00000566824 OR1J1Q8NGS3 322 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 PERPQ96FX8 193 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 COQ7Q99807 217 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 CACNG6Q9BXT2 260 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 HDHD2Q9H0R4 259 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 DCLRE1BQ9H816 532 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 FAIMQ9NVQ4 179 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 BEX4Q9NWD9 120 aaPredicted RBP16.8■□□□□ 0.28
CLN3-225ENST00000566824 FAM118AQ9NWS6 357 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 DNAJC27Q9NZQ0 273 aa16.8■□□□□ 0.28
CLN3-225ENST00000566824 CMAHPQ9Y471 501 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms