RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DOK1Q99704 481 aa26.81■■□□□ 1.88
CTCF-203ENST00000566078 FBXL3Q9UKT7 428 aa26.81■■□□□ 1.88
CTCF-203ENST00000566078 SF3B6Q9Y3B4 125 aaKnown RBP26.81■■□□□ 1.88
CTCF-203ENST00000566078 A0A096LPE4 126 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 A0A1W2PPZ6 126 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 ZNF701M0R085 212 aaPredicted RBP26.8■■□□□ 1.88
CTCF-203ENST00000566078 OGG1O15527 345 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 GABRA5P31644 462 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 LSM3P62310 102 aaKnown RBP26.8■■□□□ 1.88
CTCF-203ENST00000566078 HIST1H3AP68431 136 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 CTF1Q16619 201 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 HIST2H3PS2Q5TEC6 136 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 HIST2H3AQ71DI3 136 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 ST6GALNAC3Q8NDV1 305 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 SMIM19Q96E16 107 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 CHCHD6Q9BRQ6 235 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 TMED9Q9BVK6 235 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 KCNN2Q9H2S1 579 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 PLSCR4Q9NRQ2 329 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 STUB1Q9UNE7 303 aa26.8■■□□□ 1.88
CTCF-203ENST00000566078 TRBV2A0A0J9YWF9 115 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 LOC100506127A0A0U1RQW1 187 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 PLPP2O43688 288 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 IL18BPO95998 194 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 PSMA1P25786 263 aaKnown RBP26.79■■□□□ 1.88
CTCF-203ENST00000566078 NANOS3P60323 173 aaKnown RBP26.79■■□□□ 1.88
CTCF-203ENST00000566078 TIMM50Q3ZCQ8 353 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 Q6ZT83 130 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 OR1K1Q8NGR3 316 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 CNOT4O95628 575 aaKnown RBP26.79■■□□□ 1.88
CTCF-203ENST00000566078 PATE4P0C8F1 98 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 GDI2P50395 445 aaKnown RBP26.79■■□□□ 1.88
CTCF-203ENST00000566078 TAF13Q15543 124 aa26.79■■□□□ 1.88
CTCF-203ENST00000566078 CCDC92Q53HC0 331 aaPredicted RBP26.79■■□□□ 1.88
CTCF-203ENST00000566078 CGAP01215 116 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 ZNF32P17041 273 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 PCBD1P61457 104 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 SCRN3Q0VDG4 424 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 PMPCAQ10713 525 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 SYT9Q86SS6 491 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 FGFBP3Q8TAT2 258 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 PGLYRP3Q96LB9 341 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 BCL7BQ9BQE9 202 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 SFXN3Q9BWM7 321 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 OPN3Q9H1Y3 402 aaPredicted RBP26.78■■□□□ 1.88
CTCF-203ENST00000566078 EXOSC4Q9NPD3 245 aaKnown RBP26.78■■□□□ 1.88
CTCF-203ENST00000566078 SLC5A6Q9Y289 635 aa26.78■■□□□ 1.88
CTCF-203ENST00000566078 GPX5O75715 221 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 IGHV1-2P23083 117 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 CTSSP25774 331 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 HSD11B1P28845 292 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 CRYBB2P43320 205 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 MFGE8Q08431 387 aaPredicted RBP26.77■■□□□ 1.88
CTCF-203ENST00000566078 ALKBH1Q13686 389 aaKnown RBP26.77■■□□□ 1.88
CTCF-203ENST00000566078 RHOUQ7L0Q8 258 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 RPS4Y2Q8TD47 263 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 PLEK2Q9NYT0 353 aa26.77■■□□□ 1.88
CTCF-203ENST00000566078 CNPY1Q3B7I2 92 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 ELFN2Q5R3F8 820 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 ANKRD16Q6P6B7 361 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 OR2G2Q8NGZ5 317 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 GHSRQ92847 366 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 ATF6BQ99941 703 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 DDX28Q9NUL7 540 aaKnown RBP26.76■■□□□ 1.87
CTCF-203ENST00000566078 ZNF224Q9NZL3 707 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 GTF2A1LQ9UNN4 478 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 R4GMQ9 66 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 SGCEO43556 437 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 DOK2O60496 412 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 CD53P19397 219 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 VBP1P61758 197 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 GRB2P62993 217 aaKnown RBP26.76■■□□□ 1.87
CTCF-203ENST00000566078 RAB35Q15286 201 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 SLC36A2Q495M3 483 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 SOWAHCQ53LP3 525 aaPredicted RBP26.76■■□□□ 1.87
CTCF-203ENST00000566078 FDX2Q6P4F2 183 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 PRSS35Q8N3Z0 413 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 ZNF610Q8N9Z0 462 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 WACQ9BTA9 647 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 FRRS1LQ9P0K9 344 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 SSR3Q9UNL2 185 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 TIMM10BQ9Y5J6 103 aa26.76■■□□□ 1.87
CTCF-203ENST00000566078 SRSF10O75494 262 aaKnown RBP26.75■■□□□ 1.87
CTCF-203ENST00000566078 PNPP00491 289 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 MMP7P09237 267 aaPredicted RBP26.75■■□□□ 1.87
CTCF-203ENST00000566078 CD8BP10966 210 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 NCS1P62166 190 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 FABP5Q01469 135 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 ZNF829Q3KNS6 432 aaPredicted RBP26.75■■□□□ 1.87
CTCF-203ENST00000566078 HIKESHIQ53FT3 197 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 ZNF774Q6NX45 483 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 TRMT61AQ96FX7 289 aaKnown RBP26.75■■□□□ 1.87
CTCF-203ENST00000566078 C4orf45Q96LM5 186 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 PDCD1LG2Q9BQ51 273 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 CENPOQ9BU64 300 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 OR2H1Q9GZK4 316 aa26.75■■□□□ 1.87
CTCF-203ENST00000566078 LYZL6O75951 148 aa26.74■■□□□ 1.87
CTCF-203ENST00000566078 ATE1O95260 518 aa26.74■■□□□ 1.87
CTCF-203ENST00000566078 CD1AP06126 327 aa26.74■■□□□ 1.87
CTCF-203ENST00000566078 TGFBR1P36897 503 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms