RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 OR4C15Q8NGM1 316 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 TMEM158Q8WZ71 300 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 NDEL1Q9GZM8 345 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 NARFLQ9H6Q4 476 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 TUBG2Q9NRH3 451 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 CYSLTR2Q9NS75 346 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 ATPIF1Q9UII2 106 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 WIPI2Q9Y4P8 454 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 LHFPL6Q9Y693 200 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 ABHD16AO95870 558 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 DBHP09172 617 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 T-ENOLP0DO92 83 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 HIST1H1CP16403 213 aaKnown RBP12.6□□□□□ -0.39
CLN3-213ENST00000565047 ATP6V1B2P21281 511 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 RRM2P31350 389 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 HTR5AP47898 357 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 ERFP50548 548 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 ARHGDIAP52565 204 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 TEKQ02763 1124 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 TSPAN31Q12999 210 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 MEP1BQ16820 701 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 MTX3Q5HYI7 312 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 C16orf89Q6UX73 402 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 COLCA1Q6ZS62 124 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 C1orf229Q6ZS94 237 aaPredicted RBP12.6□□□□□ -0.39
CLN3-213ENST00000565047 ZDHHC21Q8IVQ6 265 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 OR1F12Q8NHA8 337 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 TMEM186Q96B77 213 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 HAVCR1Q96D42 359 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 SAMD8Q96LT4 415 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 ERMAPQ96PL5 475 aaPredicted RBP12.6□□□□□ -0.39
CLN3-213ENST00000565047 CCT8L2Q96SF2 557 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 NMNAT3Q96T66 252 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 ZNF665Q9H7R5 613 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 SAP30LQ9HAJ7 183 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 MSL2Q9HCI7 577 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 KRCC1Q9NPI7 259 aaPredicted RBP12.6□□□□□ -0.39
CLN3-213ENST00000565047 G6PC2Q9NQR9 355 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 PLEK2Q9NYT0 353 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 ACTR3BQ9P1U1 418 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 CGGBP1Q9UFW8 167 aaPredicted RBP12.6□□□□□ -0.39
CLN3-213ENST00000565047 ZDHHC8Q9ULC8 765 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 LYVE1Q9Y5Y7 322 aa12.6□□□□□ -0.39
CLN3-213ENST00000565047 OR6C68A6NDL8 312 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 OR10H3O60404 316 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 MT-ND5P03915 603 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 MSMBP08118 114 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 HNF1AP20823 631 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 RBMXP38159 391 aaKnown RBP12.59□□□□□ -0.39
CLN3-213ENST00000565047 SRSF2Q01130 221 aaKnown RBP12.59□□□□□ -0.39
CLN3-213ENST00000565047 MVKQ03426 396 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 COX10Q12887 443 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 AVPI1Q5T686 147 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 ARL9Q6T311 187 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 ZNF620Q6ZNG0 422 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 NPEPL1Q8NDH3 523 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 SLC26A10Q8NG04 563 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 FANK1Q8TC84 345 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 ELMOD3Q96FG2 381 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 DIRC2Q96SL1 478 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 BTBD10Q9BSF8 475 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 TRIM15Q9C019 465 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 DECR2Q9NUI1 292 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 HIF1ANQ9NWT6 349 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 DCAF16Q9NXF7 216 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 NDE1Q9NXR1 346 aa12.59□□□□□ -0.39
CLN3-213ENST00000565047 PURGQ9UJV8 347 aaKnown RBP12.59□□□□□ -0.39
CLN3-213ENST00000565047 A0A1B0GWJ7 208 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 PLSCR5A0PG75 271 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 BHLHE40O14503 412 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 IDH3BO43837 385 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 KRT36O76013 467 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 AVPP01185 164 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 IGHV2-5P01817 119 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 CRABP1P29762 137 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 SLC6A6P31641 620 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 GGT2P36268 569 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 MS4A2Q01362 244 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 HFEQ30201 348 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 SLC18B1Q6NT16 456 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 LEG1Q6P5S2 330 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 CYP2R1Q6VVX0 501 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 FBXW12Q6X9E4 464 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 GLCCI1Q86VQ1 547 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 OR4K13Q8NH42 304 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 GNPDA2Q8TDQ7 276 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 ZNRF4Q8WWF5 429 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 PTP4A1Q93096 173 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 MCUR1Q96AQ8 359 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 CMBLQ96DG6 245 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 DCLRE1CQ96SD1 692 aaKnown RBP12.58□□□□□ -0.4
CLN3-213ENST00000565047 COQ7Q99807 217 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 RERGLQ9H628 205 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 SRA1Q9HD15 236 aaKnown RBP12.58□□□□□ -0.4
CLN3-213ENST00000565047 PNRC2Q9NPJ4 139 aaKnown RBP12.58□□□□□ -0.4
CLN3-213ENST00000565047 VNN3Q9NY84 501 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 IL20Q9NYY1 176 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 GRIP1Q9Y3R0 1128 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 FBN3Q75N90 2809 aa12.58□□□□□ -0.4
CLN3-213ENST00000565047 TANC2Q9HCD6 1990 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms