RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 COPS4Q9BT78 406 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 DUSP21Q9H596 190 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 COPS3Q9UNS2 423 aa17.96■□□□□ 0.47
CLN3-212ENST00000564574 EXOSC1Q9Y3B2 195 aaKnown RBP17.96■□□□□ 0.47
CLN3-212ENST00000564574 DAPL1A0PJW8 107 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 ZNF878C9JN71 531 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 SYNGR3O43761 229 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 IGLV1-44P01699 117 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 SERPINA5P05154 406 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 ZNF14P17017 642 aaPredicted RBP17.95■□□□□ 0.46
CLN3-212ENST00000564574 HCCSP53701 268 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 SLC35A2P78381 396 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 EGR3Q06889 387 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 ST3GAL4Q11206 333 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 RAB39AQ14964 217 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 ZNF774Q6NX45 483 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 DEGS2Q6QHC5 323 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 SEZ6L2Q6UXD5 910 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 C22orf34Q6ZV56 151 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 DMRTC2Q8IXT2 367 aaPredicted RBP17.95■□□□□ 0.46
CLN3-212ENST00000564574 OR1F12Q8NHA8 337 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 AKR7LQ8NHP1 331 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 LINC01560Q8TB33 94 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 SMAP2Q8WU79 429 aaPredicted RBP17.95■□□□□ 0.46
CLN3-212ENST00000564574 TBX5Q99593 518 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 ATF6BQ99941 703 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 PNRC2Q9NPJ4 139 aaKnown RBP17.95■□□□□ 0.46
CLN3-212ENST00000564574 DDX28Q9NUL7 540 aaKnown RBP17.95■□□□□ 0.46
CLN3-212ENST00000564574 MYRFQ9Y2G1 1151 aa17.95■□□□□ 0.46
CLN3-212ENST00000564574 A0A1W2PQL4 384 aaPredicted RBP17.94■□□□□ 0.46
CLN3-212ENST00000564574 OR6C6A6NF89 314 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 PRSS44E7EML9 344 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 PTGES3LE9PB15 166 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 C19orf84I3L1E1 186 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 CDK1P06493 297 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 EPXP11678 715 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 KIR2DL3P43628 341 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 TMEM154Q6P9G4 183 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 ZNF322Q6U7Q0 402 aaPredicted RBP17.94■□□□□ 0.46
CLN3-212ENST00000564574 WFDC8Q8IUA0 241 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 EGFL6Q8IUX8 553 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 ACBD4Q8NC06 268 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 IL17RDQ8NFM7 739 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 OR10S1Q8NGN2 331 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 OR1J2Q8NGS2 313 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 ZC3HAV1LQ96H79 300 aaKnown RBP17.94■□□□□ 0.46
CLN3-212ENST00000564574 AMELYQ99218 206 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 RHNO1Q9BSD3 238 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 CHCHD3Q9NX63 227 aaKnown RBP17.94■□□□□ 0.46
CLN3-212ENST00000564574 KLHDC2Q9Y2U9 406 aa17.94■□□□□ 0.46
CLN3-212ENST00000564574 HECTD1Q9ULT8 2610 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 CASKO14936 926 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 MRPS14O60783 128 aaKnown RBP17.93■□□□□ 0.46
CLN3-212ENST00000564574 ZNF254O75437 659 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 MYL12AP19105 171 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 CRYGSP22914 178 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 APLNRP35414 380 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 HTR5AP47898 357 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 IDH3GP51553 393 aaPredicted RBP17.93■□□□□ 0.46
CLN3-212ENST00000564574 CHN2P52757 468 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 GRB2P62993 217 aaKnown RBP17.93■□□□□ 0.46
CLN3-212ENST00000564574 ROM1Q03395 351 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 ZNF85Q03923 595 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 RNLSQ5VYX0 342 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 KRT77Q7Z794 578 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 ZNF584Q8IVC4 421 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 CPEB3Q8NE35 698 aaKnown RBP17.93■□□□□ 0.46
CLN3-212ENST00000564574 FAM222BQ8WU58 562 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 OR8B4Q96RC9 309 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 DCLRE1CQ96SD1 692 aaKnown RBP17.93■□□□□ 0.46
CLN3-212ENST00000564574 MROQ9BYG7 248 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 NIPAL2Q9H841 368 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 CENPMQ9NSP4 180 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 ERVK13-1Q9NX77 482 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 NPAP1Q9NZP6 1156 aa17.93■□□□□ 0.46
CLN3-212ENST00000564574 IGHV1-18A0A0C4DH31 117 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 M0R1B8 84 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 RGS10O43665 173 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 H2BFMP0C1H6 154 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 PTAFRP25105 342 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 STOMP27105 288 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 OPRL1P41146 370 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 GDI2P50395 445 aaKnown RBP17.92■□□□□ 0.46
CLN3-212ENST00000564574 ZNF83P51522 516 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 ACTA2P62736 377 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 ACTG2P63267 376 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 SNTB1Q13884 538 aaKnown RBP17.92■□□□□ 0.46
CLN3-212ENST00000564574 GALEQ14376 348 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 TAF13Q15543 124 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 TBC1D28Q2M2D7 210 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 KCTD21Q4G0X4 260 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 TMEM108Q6UXF1 575 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 PLEKHG7Q6ZR37 379 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 KCTD20Q7Z5Y7 419 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.92■□□□□ 0.46
CLN3-212ENST00000564574 ZNF679Q8IYX0 411 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 RFLNBQ8N5W9 214 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 SLC30A7Q8NEW0 376 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 SNX33Q8WV41 574 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 SPTSSAQ969W0 71 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms