RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 HIST1H3AP68431 136 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 TNFAIP6P98066 277 aaPredicted RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 HIST2H3PS2Q5TEC6 136 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 GLYATQ6IB77 296 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 THSD4Q6ZMP0 1018 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 Q6ZR03 302 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 HIST2H3AQ71DI3 136 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 PEG10Q86TG7 708 aaKnown RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 ZNF283Q8N7M2 679 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 PTP4A1Q93096 173 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 RASD2Q96D21 266 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 RSRC1Q96IZ7 334 aaKnown RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 DCLRE1CQ96SD1 692 aaKnown RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 GAL3ST1Q99999 423 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 POFUT1Q9H488 388 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 GORASP2Q9H8Y8 452 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 SPAG4Q9NPE6 437 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 PLEK2Q9NYT0 353 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 SAMD4AQ9UPU9 718 aaKnown RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 COA3Q9Y2R0 106 aaPredicted RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 POLR3KQ9Y2Y1 108 aaPredicted RBP14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 STARD10Q9Y365 291 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 NPTNQ9Y639 398 aa14.55□□□□□ -0.08
VPS9D1-203ENST00000563798 LOC105371242A0A075B767 164 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 TRBV4-1A0A0J9YWV2 114 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 IGHV2-70P01814 119 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 RAC2P15153 192 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 TNFRSF1AP19438 455 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 TNFSF4P23510 183 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 RGS6P49758 472 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 SEC23BQ15437 767 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 CCDC92Q53HC0 331 aaPredicted RBP14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 DCAF12L2Q5VW00 463 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 PGM2L1Q6PCE3 622 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 OR1F12Q8NHA8 337 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 CMBLQ96DG6 245 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 NUAK2Q9H093 628 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 KRCC1Q9NPI7 259 aaPredicted RBP14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 TMEM106BQ9NUM4 274 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 ASH2LQ9UBL3 628 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 IL19Q9UHD0 177 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 OPN4Q9UHM6 478 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 PCDHB10Q9UN67 800 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 IER3IP1Q9Y5U9 82 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 NBEAL1Q6ZS30 2694 aa14.54□□□□□ -0.08
VPS9D1-203ENST00000563798 UNC119BA6NIH7 251 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 HAX1O00165 279 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 IMPA2O14732 288 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 FOXH1O75593 365 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 SEMG1P04279 462 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 CRABP1P29762 137 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 CDKN2AP42771 156 aaKnown RBP14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 COMPP49747 757 aaPredicted RBP14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 RPS6KA3P51812 740 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 TUSC1Q2TAM9 212 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 TMEM155Q4W5P6 130 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 FGD3Q5JSP0 725 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 SMARCD3Q6STE5 483 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 FBXW12Q6X9E4 464 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 PTCHD4Q6ZW05 846 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 LRRC28Q86X40 367 aaPredicted RBP14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 FAM86B1Q8N7N1 296 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 NANPQ8TBE9 248 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 FAM216AQ8WUB2 273 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 JMJD8Q96S16 334 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 GPA33Q99795 319 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 EGFL7Q9UHF1 273 aa14.53□□□□□ -0.08
VPS9D1-203ENST00000563798 SOCS2O14508 198 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 ARPC3O15145 178 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 SURF4O15260 269 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 SMIM11AP58511 58 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 SPICQ8N5J4 248 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 SIGLEC11Q96RL6 698 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 C7orf69Q9H7B7 122 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 PATZ1Q9HBE1 687 aaKnown RBP14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 DCAF16Q9NXF7 216 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 AURKCQ9UQB9 309 aa14.52□□□□□ -0.09
VPS9D1-203ENST00000563798 IGLV1-36A0A0B4J1U3 117 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 ISPDA4D126 451 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 IFNL4K9M1U5 179 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 RER1O15258 196 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 GMNNO75496 209 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 HSD17B1P14061 328 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 CPT2P23786 658 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 ZFP36P26651 326 aaKnown RBP14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 KRT72Q14CN4 511 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 RFX4Q33E94 735 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 KRTAP27-1Q3LI81 207 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 DNM1P34Q6PK57 102 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 COLCA1Q6ZS62 124 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 GJC3Q8NFK1 279 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 OR2Z1Q8NG97 314 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 OR5L1Q8NGL2 311 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 ST7LQ8TDW4 575 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 SLC7A6Q92536 515 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 PYURFQ96I23 114 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 COQ7Q99807 217 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 ELAC2Q9BQ52 826 aaKnown RBP14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 SUCNR1Q9BXA5 334 aa14.51□□□□□ -0.09
VPS9D1-203ENST00000563798 HDHD2Q9H0R4 259 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms