RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 FAF1Q9UNN5 650 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CCL26Q9Y258 94 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 HS3ST2Q9Y278 367 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RCL1Q9Y2P8 373 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 KCNIP3Q9Y2W7 256 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SAR1BQ9Y6B6 198 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PTPRSQ13332 1948 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 WDR91A4D1P6 747 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 FAM231BA6NCW3 169 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GAGE12JA6NER3 117 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SLCO1B7G3V0H7 640 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 H3BNX3 289 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PGRMC1O00264 195 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SULT1C2O00338 296 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PLPP1O14494 284 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PRMT5O14744 637 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 OR7A10O76100 309 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 KLF8O95600 359 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RAB3DO95716 219 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 OXTP01178 125 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GPIP06744 558 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PRSS56P0CW18 603 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF30P17039 623 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 FASP25445 335 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ACRV1P26436 265 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GIFP27352 417 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 MAGEA2P43356 314 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TGM4P49221 684 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RPS14P62263 151 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RPS21P63220 83 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SCRN3Q0VDG4 424 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF155Q12901 538 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 CAPRIN1Q14444 709 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 LAGE3Q14657 143 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PAFAH1B3Q15102 231 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 MOGQ16653 247 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ODF3L2Q3SX64 289 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 NT5DC3Q86UY8 548 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GVQW1Q8N7I0 195 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 MDS2Q8NDY4 140 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 RPLP0P6Q8NHW5 317 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TOMM40LQ969M1 308 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 C17orf77Q96MU5 243 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 GABRG3Q99928 467 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 MICU1Q9BPX6 476 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 SNRNP25Q9BV90 132 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 TRIM45Q9H8W5 580 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PATZ1Q9HBE1 687 aaKnown RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 ABCB10Q9NRK6 738 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 NLE1Q9NVX2 485 aaPredicted RBP4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 PAK5Q9P286 719 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 HEY1Q9Y5J3 304 aa4.41□□□□□ -1.7
VPS35P1-201ENST00000563400 KIAA1671Q9BY89 1806 aa4.4□□□□□ -1.7
VPS35P1-201ENST00000563400 BRCA2P51587 3418 aa4.4□□□□□ -1.7
VPS35P1-201ENST00000563400 MYO7AQ13402 2215 aa4.4□□□□□ -1.7
VPS35P1-201ENST00000563400 VWA8A3KMH1 1905 aa4.4□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF638Q14966 1978 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 VSTM2BA6NLU5 285 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CLDN34H7C241 214 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CST8O60676 142 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 HPP00738 406 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 GIMD1P0DJR0 217 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 COX5BP10606 129 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 HLA-DOBP13765 273 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 EFNA1P20827 205 aaPredicted RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 HSD11B1P28845 292 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 KIR3DL2P43630 455 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 RASSF2P50749 326 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 RPS24P62847 133 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 DGCR2P98153 550 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 VLDLRP98155 873 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CAV1Q03135 178 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF33BQ06732 778 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 ST3GAL3Q11203 375 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 OR4D1Q15615 310 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNHIT3Q15649 155 aaPredicted RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 TRIM16LQ309B1 348 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 UNC50Q53HI1 259 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CYBRD1Q53TN4 286 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 TPRG1LQ5T0D9 272 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 FAHD1Q6P587 224 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 ENTHD1Q8IYW4 607 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 LIX1Q8N485 282 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF680Q8NEM1 530 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 OR2L5Q8NG80 312 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 JOSD2Q8TAC2 188 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 RNASEH2CQ8TDP1 164 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CXorf40AQ8TE69 158 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 PHF10Q8WUB8 498 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 NDRG1Q92597 394 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CPNE4Q96A23 557 aaPredicted RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 DGCR14Q96DF8 476 aaKnown RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 CMTM5Q96DZ9 223 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 URB1-AS1Q96HZ7 61 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 PACRGQ96M98 296 aaPredicted RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 NICN1Q9BSH3 213 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 PLA2G2FQ9BZM2 168 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 C8orf4Q9NR00 106 aa4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 TUBA8Q9NY65 449 aaPredicted RBP4.4□□□□□ -1.71
VPS35P1-201ENST00000563400 TAS2R9Q9NYW1 312 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms