RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TRAPPC2LH3BP13 241 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 CXCR6O00574 342 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 NME4O00746 187 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 SGCEO43556 437 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 SERPINA1P01009 418 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 COX5BP10606 129 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 GSTM3P21266 225 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 KITLGP21583 273 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 SLC7A2P52569 658 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 ANKDD1AQ495B1 522 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 ZBED5Q49AG3 693 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 IFI44LQ53G44 452 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 ZMAT1Q5H9K5 638 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 C1orf94Q6P1W5 598 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 ARL9Q6T311 187 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 MBOAT2Q6ZWT7 520 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 FKBP9P1Q75LS8 142 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 CBLL1Q75N03 491 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 RNF113BQ8IZP6 322 aaKnown RBP9.8□□□□□ -0.84
USP3-220ENST00000561381 ZNF283Q8N7M2 679 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 DEFB108BQ8NET1 73 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 ITLN1Q8WWA0 313 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 FAM46AQ96IP4 442 aaKnown RBP9.8□□□□□ -0.84
USP3-220ENST00000561381 ZNF570Q96NI8 536 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 SIGLEC11Q96RL6 698 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 JMJD8Q96S16 334 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 OCSTAMPQ9BR26 566 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 C1QTNF5Q9BXJ0 243 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 RERGLQ9H628 205 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 ARGLU1Q9NWB6 273 aaPredicted RBP9.8□□□□□ -0.84
USP3-220ENST00000561381 IL20RAQ9UHF4 553 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 XKRYO14609 159 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 GSTA4O15217 222 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 RER1O15258 196 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 SPRY1O43609 319 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 SLC16A7O60669 478 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 FOXH1O75593 365 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 GPANK1O95872 356 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 DBHP09172 617 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 NCK1P16333 377 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 LIMS1P48059 325 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 UBA52P62987 128 aaKnown RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 SCRN3Q0VDG4 424 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 DBPQ10586 325 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 KRR1Q13601 381 aaKnown RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 HLXQ14774 488 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 ZMYND11Q15326 602 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 CCDC92Q53HC0 331 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 AWAT1Q58HT5 328 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 KLF17Q5JT82 389 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 TMPRSS11FQ6ZWK6 438 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 ZER1Q7Z7L7 766 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 LRRC28Q86X40 367 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 OR5AS1Q8N127 324 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 BCL6BQ8N143 479 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 SIGLECL1Q8N7X8 197 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 FAM156AQ8NDB6 213 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 NPEPL1Q8NDH3 523 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 SLC7A13Q8TCU3 470 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 HAVCR1Q96D42 359 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 SAMD8Q96LT4 415 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 DUX5Q96PT3 197 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 SYT4Q9H2B2 425 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 NMNAT1Q9HAN9 279 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 PATZ1Q9HBE1 687 aaKnown RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 PLEK2Q9NYT0 353 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 ASH2LQ9UBL3 628 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 ZNF69Q9UC07 566 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 SIGLEC7Q9Y286 467 aa9.79□□□□□ -0.84
USP3-220ENST00000561381 COA3Q9Y2R0 106 aaPredicted RBP9.79□□□□□ -0.84
USP3-220ENST00000561381 PPIAL4EA0A075B759 164 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 PPIAL4CA0A0B4J2A2 164 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 IGHV3-64DA0A0J9YX35 117 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 OR6C6A6NF89 314 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 PPIAL4DF5H284 164 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 PTP4A3O75365 173 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 ZNF205O95201 554 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 PPIAL4FP0DN26 164 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 COX4I1P13073 169 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 TNFSF4P23510 183 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 FPR2P25090 351 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 SLC6A9P48067 706 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 GSK3BP49841 420 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 FXYD6P3P58550 94 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 BTG1P62324 171 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 GUCY1A3Q02108 690 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 ZNF154Q13106 437 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 AQP6Q13520 282 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 TMEM155Q4W5P6 130 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 C8orf82Q6P1X6 216 aaPredicted RBP9.78□□□□□ -0.84
USP3-220ENST00000561381 PTCHD4Q6ZW05 846 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 RRM2BQ7LG56 351 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 ARPINQ7Z6K5 226 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.78□□□□□ -0.84
USP3-220ENST00000561381 TREML1Q86YW5 311 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 KLHL36Q8N4N3 616 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 SPICQ8N5J4 248 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 OR1F12Q8NHA8 337 aa9.78□□□□□ -0.84
USP3-220ENST00000561381 RP9Q8TA86 221 aaKnown RBP9.78□□□□□ -0.84
USP3-220ENST00000561381 OR2V2Q96R30 315 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms