RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SLC16A6O15403 523 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 SPRY3O43610 288 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 NME2P1O60361 137 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZIC3O60481 467 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 WBP4O75554 376 aaKnown RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 NME2P22392 152 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 CNPY1Q3B7I2 92 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 SCGB2B2Q4G0G5 96 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR2T2Q6IF00 324 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF454Q8N9F8 522 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF610Q8N9Z0 462 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR1J1Q8NGS3 322 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 UBALD1Q8TB05 177 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ENKURQ8TC29 256 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TNFAIP8L1Q8WVP5 186 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PTP4A1Q93096 173 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 DHRS1Q96LJ7 313 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 SIGLEC11Q96RL6 698 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ATF6BQ99941 703 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 MICU1Q9BPX6 476 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 POTEKPQ9BYX7 375 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF442Q9H7R0 627 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 NOX4Q9NPH5 578 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 GPR84Q9NQS5 396 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 C14orf119Q9NWQ9 140 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PAK1IP1Q9NWT1 392 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ERVK13-1Q9NX77 482 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 MOKQ9UQ07 419 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PLEKHA6Q9Y2H5 1048 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 FREM1Q5H8C1 2179 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ANKRD30BLA7E2S9 258 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 RBMXL2O75526 392 aaKnown RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 WISP2O76076 250 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 IFNA6P05013 189 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR2T7P0C7T2 308 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PGAM2P15259 253 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 FAHP16930 419 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 RORCP51449 518 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 MTCP1P56278 107 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 DEFA1P59665 94 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 DEFA3P59666 94 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PCBD1P61457 104 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 FAM27E3Q08E93 113 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 THEM4Q5T1C6 240 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF367Q7RTV3 350 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM200AQ86VY9 491 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 RPRMLQ8N4K4 120 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 RFLNBQ8N5W9 214 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR5T2Q8NGG2 359 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR2T27Q8NH04 317 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 LINC01560Q8TB33 94 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 LIPHQ8WWY8 451 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PLPPR2Q96GM1 343 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 SYT3Q9BQG1 590 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ACTR6Q9GZN1 396 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TAS2R5Q9NYW4 299 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 NDRG3Q9UGV2 375 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR52A1Q9UKL2 312 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 LOC102725191A0A1B0GVB3 256 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM200CA6NKL6 621 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 E9PI62 339 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ANGPTL7O43827 346 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZG16O60844 167 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 WDR1O75083 606 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 OR7C1O76099 320 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 BGLAPP02818 100 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PDGFAP04085 211 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TFAP2AP05549 437 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 MST1P26927 711 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF121P58317 390 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TAS2R43P59537 309 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 CBX3Q13185 183 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 RSU1Q15404 277 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 GSG1Q2KHT4 349 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ADAM5Q6NVV9 412 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 DBX2Q6ZNG2 339 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 MRGPRGQ86SM5 289 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 GLRX5Q86SX6 157 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 FTMTQ8N4E7 242 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 C17orf47Q8NEP4 570 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 POC1BQ8TC44 478 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 AP3S1Q92572 193 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 BANF2Q9H503 90 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM138Q9NPI0 162 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 EXOSC3Q9NQT5 275 aaKnown RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 ZC4H2Q9NQZ6 224 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 POLE4Q9NR33 117 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PAQR5Q9NXK6 330 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 MRPL39Q9NYK5 338 aaKnown RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 SEMA5BQ9P283 1151 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 CRNNQ9UBG3 495 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-209ENST00000560637 PIGLQ9Y2B2 252 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 HIF3AQ9Y2N7 669 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 RHBDD3Q9Y3P4 386 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 LOC107986453A0A1B0GWG9 222 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 CDRT15L2A8MXV6 281 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 FAM25EA8MYX2 175 aa4.82□□□□□ -1.64
VPS13C-209ENST00000560637 NOS1APO75052 506 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 MTRF1O75570 445 aaKnown RBP4.82□□□□□ -1.64
VPS13C-209ENST00000560637 ADRB1P08588 477 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms