RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 METAP1DQ6UB28 335 aaPredicted RBP1.65□□□□□ -2.15
VPS13C-207ENST00000558919 PDIK1LQ8N165 341 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 MS4A15Q8N5U1 240 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 LRRC52Q8N7C0 313 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 B3GNT7Q8NFL0 401 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 OR7G2Q8NG99 324 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 CIRBP-AS1Q8TBR5 109 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 PIFOQ8TCI5 191 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 CXorf40AQ8TE69 158 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 NTAN1Q96AB6 310 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 SLC25A46Q96AG3 418 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 GALNT14Q96FL9 552 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 TIMM17AQ99595 171 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 ANP32EQ9BTT0 268 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 CWH43Q9H720 699 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 ENOPH1Q9UHY7 261 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 CTNNA3Q9UI47 895 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 HYOU1Q9Y4L1 999 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 ANKRD12Q6UB98 2062 aa1.65□□□□□ -2.15
VPS13C-207ENST00000558919 SHANK1Q9Y566 2161 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 NID2Q14112 1375 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 USP47Q96K76 1375 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 FBN1P35555 2871 aaKnown RBP1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CTAGE15A4D2H0 777 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 C9JVG2 144 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 DPM1O60762 260 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 AGTP01019 485 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 KRT14P02533 472 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 FGGP02679 453 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 ZNF806P0C7X5 589 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 WARSP23381 471 aaKnown RBP1.64□□□□□ -2.15
VPS13C-207ENST00000558919 FOXN2P32314 431 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 NSG1P42857 185 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CCNHP51946 323 aaPredicted RBP1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CDH6P55285 790 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 MXD1Q05195 221 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 SRSF5Q13243 272 aaKnown RBP1.64□□□□□ -2.15
VPS13C-207ENST00000558919 TAF9Q16594 264 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 SASS6Q6UVJ0 657 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CERS6Q6ZMG9 384 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 Q6ZSR3 168 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 NIPA1Q7RTP0 329 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 SLC16A13Q7RTY0 426 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CTAGE6Q86UF2 777 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CDKL3Q8IVW4 592 aaPredicted RBP1.64□□□□□ -2.15
VPS13C-207ENST00000558919 LIX1Q8N485 282 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 EID2Q8N6I1 236 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 ST20-AS1Q8NBB2 130 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 OR4C5Q8NGB2 326 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 OR1S2Q8NGQ3 325 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 OR13G1Q8NGZ3 307 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 ELMO1Q92556 727 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 SERPINB12Q96P63 405 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 TBL1YQ9BQ87 522 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 CENPKQ9BS16 269 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 RACGAP1Q9H0H5 632 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 OR52D1Q9H346 318 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 C1orf198Q9H425 327 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 WFDC1Q9HC57 220 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 KCNJ16Q9NPI9 418 aa1.64□□□□□ -2.15
VPS13C-207ENST00000558919 LTBP4Q8N2S1 1624 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 TRBV11-1A0A0K0K1C0 115 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 CENPVL3A0A0U1RRI6 287 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 SMCO3A2RU48 225 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 VGLL3A8MV65 326 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 CDC7O00311 574 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 RNF13O43567 381 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 ERLIN1O75477 346 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 EEDO75530 441 aaKnown RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 TSPAN13O95857 204 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 ZNF688P0C7X2 276 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 PABPC4LP0CB38 370 aaKnown RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 OR5H8P0DN80 308 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 ZNF24P17028 368 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 F2RP25116 425 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 DCKP27707 260 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 OTX1P32242 354 aaPredicted RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 NAA10P41227 235 aaPredicted RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 UBE2NP61088 152 aaKnown RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 YWHAGP61981 247 aaKnown RBP eCLIP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 ACTG2P63267 376 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 BEX3Q00994 111 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 FLI1Q01543 452 aaPredicted RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 CDH17Q12864 832 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 SNRNP35Q16560 246 aaKnown RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 AVPI1Q5T686 147 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 CARD17Q5XLA6 110 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 LRRC66Q68CR7 880 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 SLC8B1Q6J4K2 584 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 WDFY1Q8IWB7 410 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 BBS5Q8N3I7 341 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 GTPBP8Q8N3Z3 284 aaPredicted RBP1.63□□□□□ -2.15
VPS13C-207ENST00000558919 FBXL13Q8NEE6 735 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 OR6N1Q8NGY5 312 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 SLC38A4Q969I6 547 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 CCDC126Q96EE4 140 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 ZNF488Q96MN9 340 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 ATP5SQ99766 215 aa1.63□□□□□ -2.15
VPS13C-207ENST00000558919 LZTS2Q9BRK4 669 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms