RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 GPBAR1Q8TDU6 330 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 DCUN1D4Q92564 292 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 S100PBPQ96BU1 408 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 MEGF10Q96KG7 1140 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 F2RL3Q96RI0 385 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 PRRT1Q99946 306 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 MENTQ9BUN1 341 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 RSRP1Q9BUV0 290 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 SELENOIQ9C0D9 397 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 LHX9Q9NQ69 397 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 APOBEC3BQ9UH17 382 aaKnown RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 NTNG1Q9Y2I2 539 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 TMED3Q9Y3Q3 217 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 TNRC6BQ9UPQ9 1833 aaKnown RBP9.81□□□□□ -0.84
USP3-206ENST00000558157 TRAV18A0A075B6X5 111 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 TRBV5-5A0A0J9YX44 114 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 A0A1W2PPH5 198 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 CPED1A4D0V7 1026 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 A6NCN8 305 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 BTBD17A6NE02 478 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 URADA6NGE7 173 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ADAM10O14672 748 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ZFPL1O95159 310 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 TACSTD2P09758 323 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ERGP11308 486 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 LYL1P12980 280 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 NME1P15531 152 aaKnown RBP9.81□□□□□ -0.84
USP3-206ENST00000558157 ADRA2CP18825 462 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 CD80P33681 288 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 POU3F4P49335 361 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 SULT1A2P50226 295 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 C1orf61Q13536 156 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 OR7A5Q15622 319 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ANKRD39Q53RE8 183 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 NCMAPQ5T1S8 102 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ADAM5Q6NVV9 412 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 FIGNL1Q6PIW4 674 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 LYPD6BQ8NI32 183 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 DNASE2BQ8WZ79 361 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 RGP1Q92546 391 aaPredicted RBP9.81□□□□□ -0.84
USP3-206ENST00000558157 ZG16BQ96DA0 208 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 BPIFA2Q96DR5 249 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ZNF559Q9BR84 538 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 LRRC61Q9BV99 259 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 RGCCQ9H4X1 137 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 MED31Q9Y3C7 131 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 CSAG2Q9Y5P2 127 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 GON4LQ3T8J9 2241 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 TRBV23OR9-2A0A075B6M9 112 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 A0A087X0M5 115 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 A0A1B0GX30 115 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 MKRN2OSH3BPM6 223 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 TCAPO15273 167 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 NDUFS4O43181 175 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 AMY2AP04746 511 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 F3P13726 295 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 CTSEP14091 401 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 TACR3P29371 465 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 DIO1P49895 249 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ZNF136P52737 540 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 SLC26A5P58743 744 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 NR0B2Q15466 257 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 CYB561A3Q8NBI2 242 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 OR52E1Q8NGJ3 308 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 OR6X1Q8NH79 312 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 NUBPLQ8TB37 319 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 RAB24Q969Q5 203 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 ZMYND19Q96E35 227 aaPredicted RBP9.81□□□□□ -0.84
USP3-206ENST00000558157 MARS2Q96GW9 593 aaKnown RBP9.81□□□□□ -0.84
USP3-206ENST00000558157 AKR1E2Q96JD6 320 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 AQP10Q96PS8 301 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 CUTCQ9NTM9 273 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 FLVCR1Q9Y5Y0 555 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 HEBP2Q9Y5Z4 205 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 KCNE3Q9Y6H6 103 aa9.81□□□□□ -0.84
USP3-206ENST00000558157 TDRD6O60522 2096 aaKnown RBP9.81□□□□□ -0.84
USP3-206ENST00000558157 SPAG17Q6Q759 2223 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 USP34Q70CQ2 3546 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 NCOR1O75376 2440 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 ELOA3CA0A087WX78 387 aaPredicted RBP9.8□□□□□ -0.84
USP3-206ENST00000558157 A0A0A6YYD5 115 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 A0A0A6YYH2 397 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 A0A0B4J2A0 478 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 hCG_1809904A0A1W2PP81 198 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 A0A1W2PR64 198 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 A0A1W2PRV1 198 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 A6NJ64 397 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 CYB5AP00167 134 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 ZNF735P0CB33 412 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 DHPSP49366 369 aaPredicted RBP9.8□□□□□ -0.84
USP3-206ENST00000558157 BLKP51451 505 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 NXPH1P58417 271 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 HSD11B2P80365 405 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 KIAA0141Q14154 515 aaPredicted RBP9.8□□□□□ -0.84
USP3-206ENST00000558157 ELOCQ15369 112 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 ZNF750Q32MQ0 723 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 PRRT3Q5FWE3 981 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 TAF8Q7Z7C8 310 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 SFTPA2Q8IWL1 248 aa9.8□□□□□ -0.84
USP3-206ENST00000558157 DTWD2Q8NBA8 298 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms