RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TRAPPC6BQ86SZ2 158 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 OR13C3Q8NGS6 347 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 MARCH1Q8TCQ1 289 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 GPX8Q8TED1 209 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 RRNAD1Q96FB5 475 aaKnown RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 WDR92Q96MX6 357 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 NUDT22Q9BRQ3 303 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 NICN1Q9BSH3 213 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 MRPL22Q9NWU5 206 aaKnown RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 CLEC1BQ9P126 229 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 COA3Q9Y2R0 106 aaPredicted RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 ETV7Q9Y603 341 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 C17orf105B2RV13 164 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 ICOSLGO75144 302 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 ADH1BP00325 375 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 ITGB2P05107 769 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 CD96P40200 585 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 DNASE1L1P49184 302 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 Q6ZSR6 202 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 SLC29A4Q7RTT9 530 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 FJX1Q86VR8 437 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 ZNF584Q8IVC4 421 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 EXD3Q8N9H8 876 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 OR5D18Q8NGL1 313 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 OR5M8Q8NGP6 311 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 THAP6Q8TBB0 222 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 ASB5Q8WWX0 329 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 MCHR2Q969V1 340 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 MRGPRFQ96AM1 343 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 MRPL48Q96GC5 212 aaKnown RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 CRB3Q9BUF7 120 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 EMC6Q9BV81 110 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 POTEKPQ9BYX7 375 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 LYRM4Q9HD34 91 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 GSKIPQ9P0R6 139 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 PRELID3BQ9Y3B1 194 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 CSAG2Q9Y5P2 127 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 HEBP2Q9Y5Z4 205 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 PCDH15Q96QU1 1955 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 TRBV5-7A0A0A0MS05 114 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 TMEM212A6NML5 194 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 SLC17A2O00624 439 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 RENP00797 406 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 GLI4P10075 376 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 NPY4RP50391 375 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 MRPS10P82664 201 aaKnown RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 COX15Q7KZN9 410 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 SLC16A13Q7RTY0 426 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 ATG4DQ86TL0 474 aaPredicted RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 COMMD2Q86X83 199 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 OTOSQ8NHW6 89 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 NPRL2Q8WTW4 380 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 MAP3K3Q99759 626 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 TNFSF18Q9UNG2 199 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 ZNF175Q9Y473 711 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 LRP12Q9Y561 859 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 TUBAL3A6NHL2 446 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 LINC01565O15544 149 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 PLRG1O43660 514 aaKnown RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 TAS2R19P59542 299 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 INSM1Q01101 510 aaPredicted RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 FGL1Q08830 312 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 RNASE10Q5GAN6 216 aaKnown RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 SLC35D3Q5M8T2 416 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 GTPBP8Q8N3Z3 284 aaPredicted RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 EID2Q8N6I1 236 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 OR51F2Q8NH61 342 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 ABHD6Q9BV23 337 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 SMIM3Q9BZL3 60 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 MED29Q9NX70 200 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 DHCR7Q9UBM7 475 aaKnown RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 GPN3Q9UHW5 284 aaPredicted RBP11.07□□□□□ -0.64
LDLR-205ENST00000557933 HIF3AQ9Y2N7 669 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 MTCH2Q9Y6C9 303 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 DOCK8Q8NF50 2099 aa11.07□□□□□ -0.64
LDLR-205ENST00000557933 IGKV1D-43A0A0B4J1Z2 117 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 C2orf74A8MZ97 194 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 SDCBPO00560 298 aaPredicted RBP11.06□□□□□ -0.64
LDLR-205ENST00000557933 FBXO24O75426 580 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 RCC1P18754 421 aaPredicted RBP11.06□□□□□ -0.64
LDLR-205ENST00000557933 SERPINF1P36955 418 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 RAB38P57729 211 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 SLC17A1Q14916 467 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 RBMS3Q6XE24 437 aaKnown RBP11.06□□□□□ -0.64
LDLR-205ENST00000557933 LRRC75AQ8NAA5 344 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 INO80EQ8NBZ0 244 aaPredicted RBP11.06□□□□□ -0.64
LDLR-205ENST00000557933 NAXEQ8NCW5 288 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 FGGYQ96C11 551 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 UTP23Q9BRU9 249 aaKnown RBP11.06□□□□□ -0.64
LDLR-205ENST00000557933 C20orf24Q9BUV8 137 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 DNTTIP1Q9H147 329 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 BANF2Q9H503 90 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 GAREM1Q9H706 876 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 PURGQ9UJV8 347 aaKnown RBP11.06□□□□□ -0.64
LDLR-205ENST00000557933 LOC107986453A0A1B0GWG9 222 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 OR14I1A6ND48 311 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 GPR89AB7ZAQ6 455 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 NPIPB9F8W1W9 429 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 SCDO00767 359 aa11.06□□□□□ -0.64
LDLR-205ENST00000557933 ZNF208O43345 1280 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms