RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TMEM100Q9NV29 134 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 FBLN5Q9UBX5 448 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 FBXO4Q9UKT5 387 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 TEX13DA0A0J9YY54 714 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 A6NIZ1 184 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 H3BSH0 61 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 BPNT1O95861 308 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 CTSBP07858 339 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 POLR2HP52434 150 aaKnown RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 RAP1BP61224 184 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 RAP1AP62834 184 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF117Q03924 483 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 PPP1R1AQ13522 171 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 SHEQ5VZ18 495 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 C3orf33Q6P1S2 294 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 RAB11FIP2Q7L804 512 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 GTPBP8Q8N3Z3 284 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 SLC30A7Q8NEW0 376 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 OR6S1Q8NH40 331 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 RNF141Q8WVD5 230 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 PIK3IP1Q96FE7 263 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 ELF4Q99607 663 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 UQCC2Q9BRT2 126 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 PTDSS2Q9BVG9 487 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 NMES1Q9C002 83 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 CGGBP1Q9UFW8 167 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 C11orf98E9PRG8 122 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 PRAMEF26H0Y7S4 382 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 HCRTR2O43614 444 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 NPIPB7O75200 414 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 STK17BO94768 372 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 DCNP07585 359 aaKnown RBP14.59□□□□□ -0.07
SHMT2-231ENST00000557433 PSMB6P28072 239 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 BDKRB2P30411 391 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 HTRA3P83110 453 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 SCRN3Q0VDG4 424 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 PCK2Q16822 640 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 MICBQ29980 383 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 FJX1Q86VR8 437 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 OR4K17Q8NGC6 315 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 OR5AP2Q8NGF4 316 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 OR1S2Q8NGQ3 325 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 FAM174AQ8TBP5 190 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 PTPMT1Q8WUK0 201 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-231ENST00000557433 MMABQ96EY8 250 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-231ENST00000557433 CST11Q9H112 138 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 OR52A1Q9UKL2 312 aa14.59□□□□□ -0.07
SHMT2-231ENST00000557433 LOC107986453A0A1B0GWG9 222 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 DCDC2BA2VCK2 349 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 TMEM235A6NFC5 223 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 A8MVM7 634 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 ALG1L2C9J202 215 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 RAB27BO00194 218 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF208O43345 1280 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 OR2T1O43869 369 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 CRHP06850 196 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 CD79AP11912 226 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 CTLA4P16410 223 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 SRSF5Q13243 272 aaKnown RBP14.58□□□□□ -0.07
SHMT2-231ENST00000557433 AWAT2Q6E213 333 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 DHRS7BQ6IAN0 325 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-231ENST00000557433 HAGHLQ6PII5 290 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-231ENST00000557433 PARM1Q6UWI2 310 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 IL34Q6ZMJ4 242 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 TRAPPC6BQ86SZ2 158 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 FAM160A2Q8N612 972 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-231ENST00000557433 ELP5Q8TE02 316 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 C8orf33Q9H7E9 229 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-231ENST00000557433 G6PC2Q9NQR9 355 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 MBD2Q9UBB5 411 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF629Q9UEG4 869 aaPredicted RBP14.58□□□□□ -0.07
SHMT2-231ENST00000557433 MLXQ9UH92 298 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 RHBDD3Q9Y3P4 386 aa14.58□□□□□ -0.07
SHMT2-231ENST00000557433 A0A0B4J2A0 478 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 DBX1A6NMT0 343 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 TMEM150CB9EJG8 249 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 TO15178 435 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 HOXB1P14653 301 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-231ENST00000557433 ZNF823P16415 610 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 IL12BP29460 328 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 MRPS21P82921 87 aaKnown RBP14.58□□□□□ -0.08
SHMT2-231ENST00000557433 HFEQ30201 348 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 LRRC37A5PQ49AS3 106 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 ACTBL2Q562R1 376 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 DRAM2Q6UX65 266 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 OR13H1Q8NG92 308 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 ADIPOR1Q96A54 375 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 SEC22AQ96IW7 307 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 ADOQ96SZ5 270 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 CHRNA10Q9GZZ6 450 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 CHMP1AQ9HD42 196 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-231ENST00000557433 ASF1BQ9NVP2 202 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 SHPKQ9UHJ6 478 aa14.58□□□□□ -0.08
SHMT2-231ENST00000557433 ARHGEF17Q96PE2 2063 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-231ENST00000557433 NPIPB13A6NJU9 1138 aa14.57□□□□□ -0.08
SHMT2-231ENST00000557433 NPIPB4C9JG80 1138 aa14.57□□□□□ -0.08
SHMT2-231ENST00000557433 PLPP3O14495 311 aa14.57□□□□□ -0.08
SHMT2-231ENST00000557433 EFSO43281 561 aa14.57□□□□□ -0.08
SHMT2-231ENST00000557433 RAD1O60671 282 aa14.57□□□□□ -0.08
SHMT2-231ENST00000557433 ICOSLGO75144 302 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms