RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 METTL1Q9UBP6 276 aaKnown RBP6.89□□□□□ -1.31
LIMA1-216ENST00000552909 DMRT1Q9Y5R6 373 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF780BQ9Y6R6 833 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 BAHCC1Q9P281 2608 aa6.89□□□□□ -1.31
LIMA1-216ENST00000552909 LOC102723996A0A087X1L8 192 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 A0A1W2PPK0 400 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ANKRD61A6NGH8 418 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 FAM183AA6NL82 134 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TGFBR3LH3BV60 316 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ACOT7O00154 380 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PHYHO14832 338 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TXNL1O43396 289 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OR2F2O95006 317 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 F12P00748 615 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 SFTPCP11686 197 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CSNK2A2P19784 350 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 MAOAP21397 527 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ITGA3P26006 1051 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PPP2R1BP30154 601 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 MPIP34949 423 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PTGER1P34995 402 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NCBP2P52298 156 aaKnown RBP eCLIP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 FABP9Q0Z7S8 132 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 AIMP2Q13155 320 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OR2F1Q13607 317 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF345Q14585 488 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PCOLCEQ15113 449 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NSDHLQ15738 373 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CDNFQ49AH0 187 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 LIN54Q6MZP7 749 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 JMJD6Q6NYC1 403 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PLBD1Q6P4A8 553 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 MEPCEQ7L2J0 689 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 C6orf120Q7Z4R8 191 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OR2T33Q8NG76 320 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OR1J4Q8NGS1 313 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OR13C5Q8NGS8 318 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NR4A3Q92570 626 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 GHSRQ92847 366 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CNRIP1Q96F85 164 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PGLYRP3Q96LB9 341 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF75AQ96N20 296 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PTCHD1Q96NR3 888 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 AMDHD1Q96NU7 426 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 GLIPR2Q9H4G4 154 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 P2RX2Q9UBL9 471 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 RPH3AQ9Y2J0 694 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 AK6Q9Y3D8 172 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CLDN16Q9Y5I7 305 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 SPACA6W5XKT8 324 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 UBR5O95071 2799 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TRAV14DV4A0A0A6YYC5 116 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NSG1A0A0A6YYJ2 146 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM272A0A1B0GTI8 110 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 COLCA2A8K830 154 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NUDT19A8MXV4 375 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 J3QLW9 94 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CYR61O00622 381 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 SVILO95425 2214 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 IGHEP01854 428 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 RNF224P0DH78 156 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NR2F1P10589 423 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 RNH1P13489 461 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF19P17023 458 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NFYBP25208 207 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ABCD3P28288 659 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NTSP30990 170 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 GPX4P36969 197 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 FRKP42685 505 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OMPP47874 163 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 P2RX1P51575 399 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 SOX8P57073 446 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ID2Q02363 134 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 SYPL1Q16563 259 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NDUFAF6Q330K2 333 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TEX30Q5JUR7 227 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM69Q5SWH9 247 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NIPAL3Q6P499 406 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 RPTNQ6XPR3 784 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NDUFAF7Q7L592 441 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CPEB2Q7Z5Q1 589 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ANKRD37Q7Z713 158 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 KRT77Q7Z794 578 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PLPP5Q8NEB5 264 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 OR4K14Q8NGD5 310 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 C15orf40Q8WUR7 153 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TCTEX1D2Q8WW35 142 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 METTL21AQ8WXB1 218 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 PSMF1Q92530 271 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 GTF3AQ92664 365 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ARL11Q969Q4 196 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 S100A16Q96FQ6 103 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF764Q96H86 408 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 THOC3Q96J01 351 aaKnown RBP6.88□□□□□ -1.31
LIMA1-216ENST00000552909 C4orf36Q96KX1 117 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 IMMP1LQ96LU5 166 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF681Q96N22 645 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 DERL3Q96Q80 235 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 VRK1Q99986 396 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms