RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SP140LQ9H930 580 aa14□□□□□ -0.17
PRPF40A-212ENST00000545856 B3GNT2Q9NY97 397 aa14□□□□□ -0.17
PRPF40A-212ENST00000545856 HCFC1P51610 2035 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 OR6C6A6NF89 314 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 METTL15A6NJ78 407 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 RAD51DO75771 328 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 GPANK1O95872 356 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 MT-ND2P03891 347 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 SCG5P05408 212 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF32P17041 273 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 UGT2B10P36537 528 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 OPRL1P41146 370 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 RIDAP52758 137 aaKnown RBP13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 FOXG1P55316 489 aaPredicted RBP13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF85Q03923 595 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF684Q5T5D7 378 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF367Q7RTV3 350 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 KRT77Q7Z794 578 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 C1orf174Q8IYL3 243 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 SPARTQ8N0X7 666 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 LRRC18Q8N456 261 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 SPTSSAQ969W0 71 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 FBXO17Q96EF6 278 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ATF6BQ99941 703 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 SH3GL3Q99963 347 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 RHNO1Q9BSD3 238 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 SLC24A3Q9HC58 644 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 TRIM36Q9NQ86 728 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 PLEK2Q9NYT0 353 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF224Q9NZL3 707 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 ERVK-18Q9QC07 812 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 CRNNQ9UBG3 495 aaPredicted RBP13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 SCOCQ9UIL1 159 aa13.99□□□□□ -0.17
PRPF40A-212ENST00000545856 IQCMA0A1B0GVH7 501 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 DOK2O60496 412 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 IGKV3-15P01624 115 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 CBR1P16152 277 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 OTX1P32242 354 aaPredicted RBP13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 TGM4P49221 684 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 RAB1AP62820 205 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF829Q3KNS6 432 aaPredicted RBP13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 HIKESHIQ53FT3 197 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 C9orf135Q5VTT2 229 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 UBE2UQ5VVX9 321 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 OR1J2Q8NGS2 313 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 THEM6Q8WUY1 208 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 ITLN2Q8WWU7 325 aaPredicted RBP13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 MAP6Q96JE9 813 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 FOXN4Q96NZ1 517 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 ACTR6Q9GZN1 396 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 NGBQ9NPG2 151 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 ACOT13Q9NPJ3 140 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 PNRC2Q9NPJ4 139 aaKnown RBP13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 COPS3Q9UNS2 423 aa13.98□□□□□ -0.17
PRPF40A-212ENST00000545856 A0A096LPE4 126 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 A0A1W2PPZ6 126 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 SYNGR3O43761 229 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 ICMTO60725 284 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 SEC14L2O76054 403 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 APOL3O95236 402 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 SERPINA5P05154 406 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 H2BFMP0C1H6 154 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 ETV1P50549 477 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 MMP16P51512 607 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 PSG4Q00888 419 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 GPR50Q13585 617 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 FDX2Q6P4F2 183 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 UNQ6126/PRO20091Q6UXV3 157 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 NCCRP1Q6ZVX7 275 aaPredicted RBP13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 VASH1Q7L8A9 365 aaPredicted RBP13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 LINC00346Q8IVM7 164 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 ZNF485Q8NCK3 441 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 OR1F12Q8NHA8 337 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 KCNJ15Q99712 375 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 RNF121Q9H920 327 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 NDRG3Q9UGV2 375 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 LSM2Q9Y333 95 aaKnown RBP13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 SLC25A15Q9Y619 301 aa13.97□□□□□ -0.17
PRPF40A-212ENST00000545856 WIPF3A6NGB9 483 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 RER1O15258 196 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 ABHD16AO95870 558 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 CLPTM1O96005 669 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 CD1AP06126 327 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 EPXP11678 715 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 JUNBP17275 347 aaPredicted RBP13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 CD53P19397 219 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 PCMT1P22061 227 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 TUBG1P23258 451 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 HSD11B1P28845 292 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 TTKP33981 857 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 RGS6P49758 472 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 GBX2P52951 348 aaPredicted RBP13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 NR1H2P55055 460 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 PSMA6P60900 246 aaKnown RBP13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 EMX1Q04741 257 aaPredicted RBP13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 SPHARQ15513 63 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 TAF13Q15543 124 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 KRTAP27-1Q3LI81 207 aa13.96□□□□□ -0.17
PRPF40A-212ENST00000545856 CCDC92Q53HC0 331 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms