RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 EEF1A1P5Q5VTE0 462 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 XKRXQ6PP77 449 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CXXC5Q7LFL8 322 aaKnown RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 YTHDF3Q7Z739 585 aaKnown RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 MRGPRGQ86SM5 289 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CCDC71Q8IV32 467 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 OFCC1Q8IZS5 231 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SLC7A5P1Q8MH63 180 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CNEP1R1Q8N9A8 125 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 LINC01356Q8N9X3 169 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 MFSD8Q8NHS3 518 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 PIGXQ8TBF5 258 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SSC4DQ8WTU2 575 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CA5BP1Q8WTZ4 195 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 TMEM255BQ8WV15 326 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 TMEM239Q8WW34 195 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 TAAR8Q969N4 342 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 C7orf34Q96L11 122 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF300Q96RE9 604 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF347Q96SE7 839 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ELOVL1Q9BW60 279 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SLC19A3Q9BZV2 496 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 MMP27Q9H306 513 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 MAGIXQ9H6Y5 334 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 RNF122Q9H9V4 155 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 NMNAT1Q9HAN9 279 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 IL1RAPQ9NPH3 570 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 NLKQ9UBE8 527 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 UPB1Q9UBR1 384 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 RNF6Q9Y252 685 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 MED31Q9Y3C7 131 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ESPL1Q14674 2120 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZGRF1Q86YA3 2104 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 DNAJC13O75165 2243 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 NBPF19A0A087WUL8 3843 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 DHRS12A0PJE2 317 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 K7EQM0 130 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 FFAR1O14842 300 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SMAD9O15198 467 aaKnown RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 GLCEO94923 617 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 DIRAS1O95057 198 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ADAP00813 363 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 LDLRP01130 860 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 HIST1H2ABP04908 130 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CRHP06850 196 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 TMEM225BP0DP42 221 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF3P17036 446 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 HOXB6P17509 224 aaKnown RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 BMP5P22003 454 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CBLP22681 906 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CDAP32320 146 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ERFP50548 548 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SIRPAP78324 504 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 RASGEF1BQ0VAM2 473 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SLC36A3Q495N2 470 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 OTUD3Q5T2D3 398 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 TMEM225Q6GV28 225 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 PAQR6Q6TCH4 344 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF730Q6ZMV8 503 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 HIST3H2AQ7L7L0 130 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 NKAIN4Q8IVV8 208 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CDK20Q8IZL9 346 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 GCNT2Q8N0V5 402 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF808Q8N4W9 903 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 OR56B1Q8NGI3 324 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 OR52B4Q8NGK2 314 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 OR6S1Q8NH40 331 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 OR52J3Q8NH60 311 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 RNF128Q8TEB7 428 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ABHD3Q8WU67 409 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 HIST1H2ACQ93077 130 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SGTBQ96EQ0 304 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 GMPPAQ96IJ6 420 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SSX3Q99909 188 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 PRSS27Q9BQR3 290 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SPATA25Q9BR10 227 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 PTDSS2Q9BVG9 487 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 SFXN3Q9BWM7 321 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 CHID1Q9BWS9 393 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ANKRD19PQ9H560 264 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 RAB9BQ9NP90 201 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 KRCC1Q9NPI7 259 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 EMC3Q9P0I2 261 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 KLHL13Q9P2N7 655 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 ZNF629Q9UEG4 869 aaPredicted RBP4.5□□□□□ -1.69
CLIP1-217ENST00000543205 TESMINQ9Y4I5 508 aa4.5□□□□□ -1.69
CLIP1-217ENST00000543205 POLQO75417 2590 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 MED12Q93074 2177 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 GTF3C1Q12789 2109 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 TRAV6A0A075B6T7 132 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 A0A1W2PNV4 684 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 USP17L23D6RBM5 183 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 H0Y8G0 127 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 NDUFS8O00217 210 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 GNGT2O14610 69 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 SS18L1O75177 396 aaPredicted RBP4.49□□□□□ -1.69
CLIP1-217ENST00000543205 KRT36O76013 467 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 OR6A2O95222 327 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 SPDEFO95238 335 aa4.49□□□□□ -1.69
CLIP1-217ENST00000543205 GADD45GO95257 159 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms