RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 PCSK6P29122 969 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 ATP6V1E1P36543 226 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 ACTC1P68032 377 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 ACTA1P68133 377 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 TLE4Q04727 773 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 KLHL22Q53GT1 634 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 CCDC92Q53HC0 331 aaPredicted RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 ZNF774Q6NX45 483 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 KCTD18Q6PI47 426 aaPredicted RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 DEGS2Q6QHC5 323 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 DPY19L4Q7Z388 723 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 ZNF584Q8IVC4 421 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 OR2T27Q8NH04 317 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 FBLIM1Q8WUP2 373 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 COG8Q96MW5 612 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 ZNF184Q99676 751 aaPredicted RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 ANKRD60Q9BZ19 345 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 NIPAL2Q9H841 368 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 CDH20Q9HBT6 801 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 NOX3Q9HBY0 568 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 DDX28Q9NUL7 540 aaKnown RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 MRPS18AQ9NVS2 196 aaKnown RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 DNAJC27Q9NZQ0 273 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 EIF3KQ9UBQ5 218 aaKnown RBP10.57□□□□□ -0.72
DDX55-210ENST00000543016 EDARQ9UNE0 448 aa10.57□□□□□ -0.72
DDX55-210ENST00000543016 COL12A1Q99715 3063 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 IGHV2OR16-5A0A0B4J2B6 119 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ZNF878C9JN71 531 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ABCD4O14678 606 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 SIAH2O43255 324 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 LYNP07948 512 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ALOX5APP20292 161 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 COL8A1P27658 744 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 RAD52P43351 418 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 HTR5AP47898 357 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 RGS6P49758 472 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 CXCR4P61073 352 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 RPS23P62266 143 aaKnown RBP10.56□□□□□ -0.72
DDX55-210ENST00000543016 GRB2P62993 217 aaKnown RBP10.56□□□□□ -0.72
DDX55-210ENST00000543016 GALK2Q01415 458 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 RAB40BQ12829 278 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 SLC22A25Q6T423 547 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 DCXRQ7Z4W1 244 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 BCDIN3DQ7Z5W3 292 aaKnown RBP10.56□□□□□ -0.72
DDX55-210ENST00000543016 CDC20BQ86Y33 519 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 LINC00346Q8IVM7 164 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ZNF295-AS1Q8N0V1 137 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 CPEB3Q8NE35 698 aaKnown RBP10.56□□□□□ -0.72
DDX55-210ENST00000543016 NUP37Q8NFH4 326 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 AKR7LQ8NHP1 331 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ST7LQ8TDW4 575 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 RNF133Q8WVZ7 376 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 SPTSSAQ969W0 71 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 MRPL48Q96GC5 212 aaKnown RBP10.56□□□□□ -0.72
DDX55-210ENST00000543016 MAP6Q96JE9 813 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 POM121L2Q96KW2 1035 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ATF6BQ99941 703 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ABHD6Q9BV23 337 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 BCL2L14Q9BZR8 327 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 SP140LQ9H930 580 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ELOVL3Q9HB03 270 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 ADGRL4Q9HBW9 690 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 LAMP5Q9UJQ1 280 aa10.56□□□□□ -0.72
DDX55-210ENST00000543016 C5orf49A4QMS7 147 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 ZNF670-ZNF695F2Z2N8 137 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 SELENOFO60613 162 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 ZNF254O75437 659 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 WBP4O75554 376 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 CLIC3O95833 236 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 FADS2O95864 444 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 CELA3BP08861 270 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 NR4A1P22736 598 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 MYF6P23409 242 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 APEX1P27695 318 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 DCTDP32321 178 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 NAA10P41227 235 aaPredicted RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 TPTEP56180 551 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 EGR3Q06889 387 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 CDK5R2Q13319 367 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 EIF2B1Q14232 305 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 TAF13Q15543 124 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 KRTAP27-1Q3LI81 207 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 C6orf52Q5T4I8 152 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 CORO6Q6QEF8 472 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 LYPD4Q6UWN0 246 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 B3GLCTQ6Y288 498 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 ZNF704Q6ZNC4 412 aaPredicted RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 CFAP77Q6ZQR2 320 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 SLC35F2Q8IXU6 374 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 OR51G2Q8NGK0 314 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 APH1BQ8WW43 257 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 SLAMF6Q96DU3 332 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 RNFT2Q96EX2 444 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 CLEC4MQ9H2X3 399 aaPredicted RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 ZNF442Q9H7R0 627 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 PNRC2Q9NPJ4 139 aaKnown RBP10.55□□□□□ -0.72
DDX55-210ENST00000543016 INPP5EQ9NRR6 644 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 PLCXD1Q9NUJ7 323 aa10.55□□□□□ -0.72
DDX55-210ENST00000543016 TBCCD1Q9NVR7 557 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms