RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 FOSL1P15407 271 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 ISXQ2M1V0 245 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 C16orf47Q6ZP98 133 aaPredicted RBP12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 OR5AK2Q8NH90 309 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 OR14A16Q8NHC5 309 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 SFT2D1Q8WV19 159 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 TSEN15Q8WW01 171 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 GFI1Q99684 422 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 NRSN2Q9GZP1 204 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 GSN-AS1Q9NRJ2 163 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 PNO1Q9NRX1 252 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 OR5V1Q9UGF6 321 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 LAMP5Q9UJQ1 280 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 LOXL2Q9Y4K0 774 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 A0A087WV62 115 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 YKT6O15498 198 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 OGG1O15527 345 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 SLC25A12O75746 678 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 NKX2-2O95096 273 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 ZFP36L1Q07352 338 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 PCGF3Q3KNV8 242 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 RAB12Q6IQ22 244 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 NPSR1Q6W5P4 371 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 RAB11FIP2Q7L804 512 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 ZNF550Q7Z398 422 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 PAQR8Q8TEZ7 354 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 ZMAT3Q9HA38 289 aaKnown RBP12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 LYRM4Q9HD34 91 aa12.88□□□□□ -0.35
SFSWAP-210ENST00000541286 AGPAT2O15120 278 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 GAAP10253 952 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 NPBWR1P48145 328 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 FHL1Q13642 323 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 CCDC36Q8IYA8 594 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 POMGNT2Q8NAT1 580 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 OR51D1Q8NGF3 324 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 C16orf52Q8NHV5 167 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 TMEM106AQ96A25 262 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 RSRP1Q9BUV0 290 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 OR8D2Q9GZM6 311 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 PRTFDC1Q9NRG1 225 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 FAM96BQ9Y3D0 163 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 BSNQ9UPA5 3926 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 COL27A1Q8IZC6 1860 aaPredicted RBP12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 UBE2QL1A1L167 161 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 OR2M5A3KFT3 312 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 OIP5O43482 229 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 AK1P00568 194 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 SLC35E2P0CK97 266 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 PTGFRP43088 359 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 GPR143P51810 404 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 CLINT1Q14677 625 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 ALG10Q5BKT4 473 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 RGP1Q92546 391 aaPredicted RBP12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 PPP1R14AQ96A00 147 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 KLHDC3Q9BQ90 382 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 TLNRD1Q9H1K6 362 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 SYT4Q9H2B2 425 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 WDR76Q9H967 626 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 TREM1Q9NP99 234 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 BIN3Q9NQY0 253 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 PCDHB10Q9UN67 800 aa12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 MRPS18BQ9Y676 258 aaKnown RBP12.87□□□□□ -0.35
SFSWAP-210ENST00000541286 ABCD4O14678 606 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 MT-CO3P00414 261 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 CD53P19397 219 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 P2RX1P51575 399 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 ARHGAP40Q5TG30 622 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 STAC2Q6ZMT1 411 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 OVCH1Q7RTY7 1134 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 TIPARPQ7Z3E1 657 aaKnown RBP12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 GLB1L2Q8IW92 636 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 RXFP4Q8TDU9 374 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 THAP3Q8WTV1 239 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 GPN1Q9HCN4 374 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 GRHPRQ9UBQ7 328 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 SERTAD3Q9UJW9 196 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 RARRES3Q9UL19 164 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 ACACBO00763 2458 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 A0A1B0GUH1 482 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 ADCYAP1P18509 176 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 DUSP3P51452 185 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 AP3S2P59780 193 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 CBFBQ13951 182 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 B3GNTL1Q67FW5 361 aaPredicted RBP12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 PIP4P1Q86T03 277 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 PPP1R3BQ86XI6 285 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 OR51S1Q8NGJ8 323 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 NKD1Q969G9 470 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 HAO2Q9NYQ3 351 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 MKL2Q9ULH7 1088 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 SPTA1P02549 2419 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 TRAV8-7A0A075B6U6 113 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 TRAV18A0A075B6X5 111 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 TMEM272A0A1B0GTI8 110 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 SERINC4A6NH21 518 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 FADS1O60427 444 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 ZNF883P0CG24 379 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 BDKRB2P30411 391 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 CCKBRP32239 447 aa12.86□□□□□ -0.35
SFSWAP-210ENST00000541286 PDZK1IP1Q13113 114 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms