RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 RACGAP1Q9H0H5 632 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 FN3KQ9H479 309 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 POFUT1Q9H488 388 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 REEP1Q9H902 201 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 CHODLQ9H9P2 273 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 RPRD1BQ9NQG5 326 aaKnown RBP12.62□□□□□ -0.39
USP28-204ENST00000537642 NKIRAS2Q9NYR9 191 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 IL20Q9NYY1 176 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 SAMHD1Q9Y3Z3 626 aaKnown RBP12.62□□□□□ -0.39
USP28-204ENST00000537642 LHFPL6Q9Y693 200 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 U3KQV3 271 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 CUBNO60494 3623 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 H3BSA7 217 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 BHLHE40O14503 412 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 RER1O15258 196 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 RP2O75695 350 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 RAP2AP10114 183 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 IL2RGP31785 369 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 MMP15P51511 669 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 ARHGDIAP52565 204 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 CHN2P52757 468 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 HIST1H3AP68431 136 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 CCL8P80075 99 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 MRPS11P82912 194 aaKnown RBP12.61□□□□□ -0.39
USP28-204ENST00000537642 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP28-204ENST00000537642 MICAQ29983 383 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 PCGF3Q3KNV8 242 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 HIST2H3PS2Q5TEC6 136 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 RPL13AP3Q6NVV1 102 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 PGM2L1Q6PCE3 622 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 ARL9Q6T311 187 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 RASSF6Q6ZTQ3 369 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 HIST2H3AQ71DI3 136 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 ADGRG5Q8IZF4 528 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 SLC26A10Q8NG04 563 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 OR52L1Q8NGH7 329 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 OR1F12Q8NHA8 337 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 SLC7A6OSQ96CW6 309 aaPredicted RBP12.61□□□□□ -0.39
USP28-204ENST00000537642 DDOQ99489 341 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 ZNF275Q9NSD4 429 aaPredicted RBP12.61□□□□□ -0.39
USP28-204ENST00000537642 TBCCD1Q9NVR7 557 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 POLR1DQ9Y2S0 133 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 GRIP1Q9Y3R0 1128 aa12.61□□□□□ -0.39
USP28-204ENST00000537642 KIAA1324LA8MWY0 1029 aaPredicted RBP12.6□□□□□ -0.39
USP28-204ENST00000537642 GYG2O15488 501 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 TFP02787 698 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 MT-ND5P03915 603 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 DBHP09172 617 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 GPR6P46095 362 aaPredicted RBP12.6□□□□□ -0.39
USP28-204ENST00000537642 ZNF81P51508 661 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 TEKQ02763 1124 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 TSTQ16762 297 aaKnown RBP12.6□□□□□ -0.39
USP28-204ENST00000537642 ZNF362Q5T0B9 420 aaPredicted RBP12.6□□□□□ -0.39
USP28-204ENST00000537642 CORO6Q6QEF8 472 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 GJC3Q8NFK1 279 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 CANT1Q8WVQ1 401 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 CHID1Q9BWS9 393 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 DGCR6LQ9BY27 220 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 TMEM160Q9NX00 188 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 ATPIF1Q9UII2 106 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 STARD10Q9Y365 291 aa12.6□□□□□ -0.39
USP28-204ENST00000537642 LOC100289279A0A1B0GTE1 492 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 ZSCAN5BA6NJL1 495 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 AQP12BA6NM10 295 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 SPRY3O43610 288 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 LMX1BO60663 402 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 CDC14BO60729 498 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 SOX14O95416 240 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 IGHV1-46P01743 117 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 TMEM33P57088 247 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 COX10Q12887 443 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 PSG7Q13046 419 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 DNAL1Q4LDG9 190 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 FAM166AQ6J272 317 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 SLC18B1Q6NT16 456 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 LINC00346Q8IVM7 164 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 AQP12AQ8IXF9 295 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 CYB561A3Q8NBI2 242 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 OR10G2Q8NGC3 310 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 OR4Q3Q8NH05 313 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 HPS1Q92902 700 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 COQ7Q99807 217 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 TSSK6Q9BXA6 273 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 TBC1D23Q9NUY8 699 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 MRPL22Q9NWU5 206 aaKnown RBP12.59□□□□□ -0.39
USP28-204ENST00000537642 KLHL21Q9UJP4 597 aa12.59□□□□□ -0.39
USP28-204ENST00000537642 PLSCR5A0PG75 271 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 DHRS12A0PJE2 317 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 WNT9BO14905 357 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 PPIHO43447 177 aaKnown RBP12.58□□□□□ -0.4
USP28-204ENST00000537642 CST1P01037 141 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 GSTM3P21266 225 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 TUBG1P23258 451 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 IGFBP5P24593 272 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 PYCR1P32322 319 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 GGT2P36268 569 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CRYBB2P43320 205 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CCNIQ14094 377 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 RSPO1Q2MKA7 263 aaPredicted RBP12.58□□□□□ -0.4
USP28-204ENST00000537642 CHRFAM7AQ494W8 412 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms