RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SEMA6DQ8NFY4 1073 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 OR5L1Q8NGL2 311 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 RSRC1Q96IZ7 334 aaKnown RBP11.12□□□□□ -0.63
RTN3-207ENST00000536011 DCLRE1CQ96SD1 692 aaKnown RBP11.12□□□□□ -0.63
RTN3-207ENST00000536011 RBM4Q9BWF3 364 aaKnown RBP11.12□□□□□ -0.63
RTN3-207ENST00000536011 RERGLQ9H628 205 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 NRIP3Q9NQ35 241 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 UBAP1Q9NZ09 502 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 ABCD2Q9UBJ2 740 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 ASH2LQ9UBL3 628 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 KLHL21Q9UJP4 597 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 PURGQ9UJV8 347 aaKnown RBP11.12□□□□□ -0.63
RTN3-207ENST00000536011 AURKCQ9UQB9 309 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 NPTNQ9Y639 398 aa11.12□□□□□ -0.63
RTN3-207ENST00000536011 PPIAL4EA0A075B759 164 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 LOC105371242A0A075B767 164 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 PPIAL4CA0A0B4J2A2 164 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 OR6C6A6NF89 314 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 PPIAL4DF5H284 164 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 IFNL4K9M1U5 179 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 SLC16A7O60669 478 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 VENTXO95231 258 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 PPIAL4FP0DN26 164 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 CTLA4P16410 223 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 KITLGP21583 273 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 FUT4P22083 530 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 CRABP1P29762 137 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 LIMS1P48059 325 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 HILS1P60008 231 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 PSME3P61289 254 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 SLC27A4Q6P1M0 643 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 DPY19L2P2Q6ZN68 376 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.11□□□□□ -0.63
RTN3-207ENST00000536011 OR2Z1Q8NG97 314 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 RASD2Q96D21 266 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 SAMD8Q96LT4 415 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 TMPRSS13Q9BYE2 586 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 SYT4Q9H2B2 425 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 C7orf69Q9H7B7 122 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 ZNF446Q9NWS9 450 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 VSX1Q9NZR4 365 aaPredicted RBP11.11□□□□□ -0.63
RTN3-207ENST00000536011 NDUFAF4Q9P032 175 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 GMPR2Q9P2T1 348 aaKnown RBP11.11□□□□□ -0.63
RTN3-207ENST00000536011 IL19Q9UHD0 177 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 SIGLEC7Q9Y286 467 aa11.11□□□□□ -0.63
RTN3-207ENST00000536011 TANC2Q9HCD6 1990 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 UNC119BA6NIH7 251 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 RAC2P15153 192 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 NCK1P16333 377 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 ZNF26P17031 533 aaPredicted RBP11.1□□□□□ -0.63
RTN3-207ENST00000536011 FPR2P25090 351 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 PRDX6P30041 224 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 LCN2P80188 198 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 TMEM155Q4W5P6 130 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 TMEM255AQ5JRV8 349 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 SMARCD3Q6STE5 483 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 ZNF283Q8N7M2 679 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 GJC3Q8NFK1 279 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 OR1F12Q8NHA8 337 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 FAM216AQ8WUB2 273 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 PTP4A1Q93096 173 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 HAVCR1Q96D42 359 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 HDHD2Q9H0R4 259 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 TMEM106BQ9NUM4 274 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 DCAF13Q9NV06 445 aaKnown RBP11.1□□□□□ -0.63
RTN3-207ENST00000536011 ADA2Q9NZK5 511 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 PPP1R3CQ9UQK1 317 aa11.1□□□□□ -0.63
RTN3-207ENST00000536011 SOCS2O14508 198 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 PTP4A3O75365 173 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 TXNDC12O95881 172 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 IGHV2-70P01814 119 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 SCG5P05408 212 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 SBK2P0C263 348 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 CPT2P23786 658 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 IFNGR2P38484 337 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 OMPP47874 163 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 BTG1P62324 171 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 KCNMB1Q16558 191 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 GLYATQ6IB77 296 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 C1orf94Q6P1W5 598 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 C1orf229Q6ZS94 237 aaPredicted RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 JAZF1Q86VZ6 243 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 MUC20Q8N307 709 aaPredicted RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 FANK1Q8TC84 345 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 GCDHQ92947 438 aaPredicted RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 APOBEC3DQ96AK3 386 aaPredicted RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 MCUR1Q96AQ8 359 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 CMBLQ96DG6 245 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 ZMYND19Q96E35 227 aaPredicted RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 NUAK2Q9H093 628 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 NSRP1Q9H0G5 558 aaKnown RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 NTN4Q9HB63 628 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 EGFL7Q9UHF1 273 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 MAGEL2Q9UJ55 1249 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 COA3Q9Y2R0 106 aaPredicted RBP11.09□□□□□ -0.63
RTN3-207ENST00000536011 STARD10Q9Y365 291 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 IER3IP1Q9Y5U9 82 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 WNK2Q9Y3S1 2297 aa11.09□□□□□ -0.63
RTN3-207ENST00000536011 TENM1Q9UKZ4 2725 aa11.08□□□□□ -0.64
RTN3-207ENST00000536011 TRBV4-1A0A0J9YWV2 114 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms