RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CLEC12BQ2HXU8 276 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 RSPO1Q2MKA7 263 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-209ENST00000532725 LINC01590Q5TEZ4 76 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 ZFP1Q6P2D0 407 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 LYPD4Q6UWN0 246 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 LINC00346Q8IVM7 164 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 C10orf67Q8IYJ2 551 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 ZCCHC24Q8N2G6 241 aaKnown RBP17.05■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF511Q8NB15 262 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 OR1J1Q8NGS3 322 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 SLC7A6Q92536 515 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 RAB3IPQ96QF0 476 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-209ENST00000532725 PKP2Q99959 881 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 SYT3Q9BQG1 590 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 CDADC1Q9BWV3 514 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 MED20Q9H944 212 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 MYEF2Q9P2K5 600 aaKnown RBP17.05■□□□□ 0.32
CPSF1-209ENST00000532725 DUSP13Q9UII6 198 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 KCNG2Q9UJ96 466 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 POLR1DQ9Y2S0 133 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 IGLV3-9A0A075B6K5 115 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 FAM183AA6NL82 134 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 SSX4O60224 188 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 CLPTM1O96005 669 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF823P16415 610 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 FMO3P31513 532 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 PTGES3Q15185 160 aaKnown RBP17.04■□□□□ 0.32
CPSF1-209ENST00000532725 PCK2Q16822 640 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 ELFN2Q5R3F8 820 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 UNQ6126/PRO20091Q6UXV3 157 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 C1orf174Q8IYL3 243 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 SYNPRQ8TBG9 265 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 MARS2Q96GW9 593 aaKnown RBP17.04■□□□□ 0.32
CPSF1-209ENST00000532725 SORCS2Q96PQ0 1159 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 VRK1Q99986 396 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-209ENST00000532725 WDR76Q9H967 626 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 ELOVL3Q9HB03 270 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 KRT84Q9NSB2 600 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 TBCCD1Q9NVR7 557 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 ATPIF1Q9UII2 106 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 TMEFF2Q9UIK5 374 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-209ENST00000532725 OAZ3Q9UMX2 235 aa17.04■□□□□ 0.32
CPSF1-209ENST00000532725 TRIM64A6NGJ6 449 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 TRIM64BA6NI03 449 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 ADRA2AP08913 450 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 FOSL1P15407 271 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 EPHA2P29317 976 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 BLVRAP53004 296 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 TNK1Q13470 666 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 KRTAP27-1Q3LI81 207 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 TEX30Q5JUR7 227 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 ARL9Q6T311 187 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 CFAP77Q6ZQR2 320 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 CIARTQ8N365 385 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-209ENST00000532725 OR2AJ1Q8NGZ0 328 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 ABHD4Q8TB40 342 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 MAP6Q96JE9 813 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 COQ7Q99807 217 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 PNRC2Q9NPJ4 139 aaKnown RBP17.03■□□□□ 0.32
CPSF1-209ENST00000532725 GRIP1Q9Y3R0 1128 aa17.03■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF593O00488 134 aaPredicted RBP17.02■□□□□ 0.32
CPSF1-209ENST00000532725 LY6HO94772 140 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 DBHP09172 617 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 PSKH1P11801 424 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 RPS27P42677 84 aaKnown RBP17.02■□□□□ 0.32
CPSF1-209ENST00000532725 ALDH3B1P43353 468 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 NUDT6P53370 316 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 PPP1CBP62140 327 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 PPP2R2BQ00005 443 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF718Q3SXZ3 478 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 PLBD1Q6P4A8 553 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 RFPL4BQ6ZWI9 263 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 CPOQ8IVL8 374 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 ICA1LQ8NDH6 482 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 SLC25A40Q8TBP6 338 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 DCLRE1CQ96SD1 692 aaKnown RBP17.02■□□□□ 0.32
CPSF1-209ENST00000532725 OSBPL10Q9BXB5 764 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 TEX12Q9BXU0 123 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 OR2J1Q9GZK6 312 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 HDHD2Q9H0R4 259 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 RAB1BQ9H0U4 201 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 MS4A5Q9H3V2 200 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 S100A14Q9HCY8 104 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 HINT3Q9NQE9 182 aaKnown RBP17.02■□□□□ 0.32
CPSF1-209ENST00000532725 TVP23BQ9NYZ1 205 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 COMMD3-BMI1R4GMX3 469 aa17.02■□□□□ 0.32
CPSF1-209ENST00000532725 SAC3D1A6NKF1 404 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 PRR23D1E9PI22 279 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-209ENST00000532725 GLCEO94923 617 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 ABHD16AO95870 558 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 IGHV3-13P01766 116 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 PRR23D2P0DMB1 279 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-209ENST00000532725 PAICSP22234 425 aaKnown RBP17.01■□□□□ 0.31
CPSF1-209ENST00000532725 KLF3P57682 345 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-209ENST00000532725 SELENOVP59797 346 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 EFNB1P98172 346 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 MAD2L1BPQ15013 274 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-209ENST00000532725 SNAPC1Q16533 368 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 SPATA46Q5T0L3 261 aa17.01■□□□□ 0.31
CPSF1-209ENST00000532725 MBNL2Q5VZF2 373 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms