RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 WIPF1O43516 503 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 SGCEO43556 437 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 GMNNO75496 209 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 CD14P08571 375 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 SBK2P0C263 348 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 ZNF12P17014 697 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 ZNF26P17031 533 aaPredicted RBP9.56□□□□□ -0.88
VPS28-214ENST00000531032 TNFRSF1AP19438 455 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 RBMXP38159 391 aaKnown RBP9.56□□□□□ -0.88
VPS28-214ENST00000531032 HTR5AP47898 357 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 SLC6A9P48067 706 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 BTG1P62324 171 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 GNGT1P63211 74 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 ZNF154Q13106 437 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 AQP6Q13520 282 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 IFI44LQ53G44 452 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 MESTQ5EB52 335 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 ARMCX4Q5H9R4 360 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 ZNF730Q6ZMV8 503 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 TMPRSS11FQ6ZWK6 438 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 MBOAT2Q6ZWT7 520 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 FKBP9P1Q75LS8 142 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 DOK3Q7L591 496 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 LRRC28Q86X40 367 aaPredicted RBP9.56□□□□□ -0.88
VPS28-214ENST00000531032 SLC15A3Q8IY34 581 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 KLHL36Q8N4N3 616 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 OR2Z1Q8NG97 314 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 HAVCR1Q96D42 359 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 COG8Q96MW5 612 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 DCLRE1CQ96SD1 692 aaKnown RBP9.56□□□□□ -0.88
VPS28-214ENST00000531032 PATZ1Q9HBE1 687 aaKnown RBP9.56□□□□□ -0.88
VPS28-214ENST00000531032 DDX28Q9NUL7 540 aaKnown RBP9.56□□□□□ -0.88
VPS28-214ENST00000531032 IL19Q9UHD0 177 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 EGFL7Q9UHF1 273 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 PPIAL4AQ9Y536 164 aa9.56□□□□□ -0.88
VPS28-214ENST00000531032 OR6C6A6NF89 314 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 TRAPPC2LH3BP13 241 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 J3QW42 95 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 NME4O00746 187 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 XKRYO14609 159 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 SURF4O15260 269 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 SERPINA1P01009 418 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 HKR1P10072 659 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 CTLA4P16410 223 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 RPL4P36578 427 aaKnown RBP9.55□□□□□ -0.88
VPS28-214ENST00000531032 GPR4P46093 362 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 GSK3BP49841 420 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 SEC61A1P61619 476 aaKnown RBP9.55□□□□□ -0.88
VPS28-214ENST00000531032 ZMYND11Q15326 602 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 ZBED5Q49AG3 693 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 KLF17Q5JT82 389 aaPredicted RBP9.55□□□□□ -0.88
VPS28-214ENST00000531032 TBPL2Q6SJ96 375 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 HACD2Q6Y1H2 254 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 CBLL1Q75N03 491 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 CYP4Z1Q86W10 505 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 ITLN1Q8WWA0 313 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 CMBLQ96DG6 245 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 Q96M85 177 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 ZNF570Q96NI8 536 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 ANKRD19PQ9H560 264 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 PLEK2Q9NYT0 353 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 ADA2Q9NZK5 511 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 GMPR2Q9P2T1 348 aaKnown RBP9.55□□□□□ -0.88
VPS28-214ENST00000531032 ATPIF1Q9UII2 106 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 NUP50Q9UKX7 468 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 PPP1R3CQ9UQK1 317 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 STARD10Q9Y365 291 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 INSIG2Q9Y5U4 225 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 AUP1Q9Y679 476 aa9.55□□□□□ -0.88
VPS28-214ENST00000531032 PKD1L1Q8TDX9 2849 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 TMEM178BH3BS89 294 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 SNX3O60493 162 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 RAC2P15153 192 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 PRTN3P24158 256 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 PRDX6P30041 224 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 MDH2P40926 338 aaKnown RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 ERFP50548 548 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 MMP16P51512 607 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 PSME3P61289 254 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 LSM6P62312 80 aaKnown RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 FOXL1Q12952 345 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 KRR1Q13601 381 aaKnown RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 PRR31Q5SQ13 230 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 FBXW12Q6X9E4 464 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 RBMS3Q6XE24 437 aaKnown RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 MUC20Q8N307 709 aaPredicted RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 SIGLECL1Q8N7X8 197 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 SLC7A13Q8TCU3 470 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 SLC7A6Q92536 515 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 PTP4A1Q93096 173 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 RASD2Q96D21 266 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 HSH2DQ96JZ2 352 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 C1orf147Q96MC9 270 aaPredicted RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 OR2V2Q96R30 315 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 GPX7Q96SL4 187 aaPredicted RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 GPA33Q99795 319 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 MRI1Q9BV20 369 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 ZNF747Q9BV97 191 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 NDEL1Q9GZM8 345 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 SYT4Q9H2B2 425 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms