RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 GLSO94925 669 aaPredicted RBP18.32■□□□□ 0.52
VPS28-209ENST00000528142 NTF4P34130 210 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 TALDO1P37837 337 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 RRADP55042 308 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 SRSF6Q13247 344 aaKnown RBP18.32■□□□□ 0.52
VPS28-209ENST00000528142 ASAH1Q13510 395 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 HES5Q5TA89 166 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 ASPHD2Q6ICH7 369 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 ASB5Q8WWX0 329 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 CMTM3Q96MX0 182 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 PNRC2Q9NPJ4 139 aaKnown RBP18.32■□□□□ 0.52
VPS28-209ENST00000528142 ASH2LQ9UBL3 628 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 CDV3Q9UKY7 258 aaKnown RBP18.32■□□□□ 0.52
VPS28-209ENST00000528142 POLR1DQ9Y2S0 133 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 KLF13Q9Y2Y9 288 aaPredicted RBP18.32■□□□□ 0.52
VPS28-209ENST00000528142 PCDHGA9Q9Y5G4 932 aaKnown RBP18.32■□□□□ 0.52
VPS28-209ENST00000528142 NKX2-8O15522 239 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 RFX2P48378 723 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 LSM6P62312 80 aaKnown RBP18.31■□□□□ 0.52
VPS28-209ENST00000528142 TAB1Q15750 504 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 HYAL4Q2M3T9 481 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 GALNTL5Q7Z4T8 443 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 TMEM251Q8N6I4 163 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 LGALS14Q8TCE9 139 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 PNPLA2Q96AD5 504 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 RCE1Q9Y256 329 aa18.31■□□□□ 0.52
VPS28-209ENST00000528142 A0A1B0GVC2 190 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 A6NIN4 97 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 FAM166BA8MTA8 275 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 DHHO43323 396 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 MAGEA5P43359 124 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 PITPNBP48739 271 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 LHX2P50458 406 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 CCBE1Q6UXH8 406 aaPredicted RBP18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF704Q6ZNC4 412 aaPredicted RBP18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF671Q8TAW3 534 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 CPNE4Q96A23 557 aaPredicted RBP18.3■□□□□ 0.52
VPS28-209ENST00000528142 NABP1Q96AH0 204 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 DHDHQ9UQ10 334 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 AKAP13Q12802 2813 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF878C9JN71 531 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 RER1O15258 196 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 PLA2G10O15496 165 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 MAS1P04201 325 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 MSR1P21757 451 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 ACHEP22303 614 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 DTX3Q8N9I9 347 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 HAS2Q92819 552 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF775Q96BV0 537 aaPredicted RBP18.3■□□□□ 0.52
VPS28-209ENST00000528142 PPP1R14BQ96C90 147 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF845Q96IR2 970 aaPredicted RBP18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF416Q9BWM5 594 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 ZNF552Q9H707 407 aaPredicted RBP18.3■□□□□ 0.52
VPS28-209ENST00000528142 HHLA2Q9UM44 414 aa18.3■□□□□ 0.52
VPS28-209ENST00000528142 CELSR3Q9NYQ7 3312 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 CACNA1CQ13936 2221 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 KLRC4-KLRK1H3BQV0 150 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 CYTIPO60759 359 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 WT1P19544 449 aaPredicted RBP18.29■□□□□ 0.52
VPS28-209ENST00000528142 MEOX1P50221 254 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 CLDN18P56856 261 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 SGCAQ16586 387 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 PDSS1Q5T2R2 415 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 BCL2L15Q5TBC7 163 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 KLHL24Q6TFL4 600 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 NRARPQ7Z6K4 114 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 ELMOD2Q8IZ81 293 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 DNAAF1Q8NEP3 725 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 SNRNP27Q8WVK2 155 aaKnown RBP18.29■□□□□ 0.52
VPS28-209ENST00000528142 ABHD1Q96SE0 405 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 WACQ9BTA9 647 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 MRI1Q9BV20 369 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 NELFAQ9H3P2 528 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 NIPAL2Q9H841 368 aa18.29■□□□□ 0.52
VPS28-209ENST00000528142 LOC107986453A0A1B0GWG9 222 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 TTRP02766 147 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 PRKAR1AP10644 381 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 CFPP27918 469 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 PLGLB1Q02325 96 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 ENDOGQ14249 297 aaKnown RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 UBE2NLQ5JXB2 153 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 TMEM244Q5VVB8 128 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 CADM3Q8N126 398 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 ZFP62Q8NB50 900 aaPredicted RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 ULBP2Q9BZM5 246 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 PBOV1Q9GZY1 135 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 SLC6A15Q9H2J7 730 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 LIN7BQ9HAP6 207 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 RHBDL2Q9NX52 303 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 CLEC4AQ9UMR7 237 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 FOXJ3Q9UPW0 622 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 MED13Q9UHV7 2174 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 ASPMQ8IZT6 3477 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 LINC00854A0A1B0GVQ3 168 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 ANXA2P2A6NMY6 339 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 TTLL8A6PVC2 850 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 DOK2O60496 412 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 ANXA2P07355 339 aaKnown RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 UBCP0CG48 685 aaKnown RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 CALCBP10092 127 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms