RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RAB6AP20340 208 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 GMFBP60983 142 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 C4orf46Q504U0 113 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 RNF138Q8WVD3 245 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 PISDQ9UG56 409 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 PMS2P2O95744 297 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 CYB5AP00167 134 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 S100A11P31949 105 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 FOXL2P58012 376 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 STARD6P59095 220 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 PMPCAQ10713 525 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 FOXF1Q12946 379 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 NHLRC3Q5JS37 347 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 RAB12Q6IQ22 244 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 OR10H5Q8NGA6 315 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 SUN5Q8TC36 379 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 PMEPA1Q969W9 287 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 SHDQ96IW2 340 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 NKX3-1Q99801 234 aaPredicted RBP18.97■□□□□ 0.63
VPS28-205ENST00000526204 CENPMQ9NSP4 180 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 MED29Q9NX70 200 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 RPH3AQ9Y2J0 694 aaPredicted RBP18.97■□□□□ 0.63
VPS28-205ENST00000526204 TMA7Q9Y2S6 64 aaKnown RBP18.97■□□□□ 0.63
VPS28-205ENST00000526204 SPAG17Q6Q759 2223 aa18.97■□□□□ 0.63
VPS28-205ENST00000526204 A0A1W2PNV4 684 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 METTL21EPA6NDL7 271 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 GOSR2O14653 212 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 M6PRP20645 277 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 ENPP1P22413 925 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 ZNF41P51814 821 aaPredicted RBP18.96■□□□□ 0.63
VPS28-205ENST00000526204 SIGIRRQ6IA17 410 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 TSSK4Q6SA08 328 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 LYPD6Q86Y78 171 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 MRGPRX4Q96LA9 322 aa18.96■□□□□ 0.63
VPS28-205ENST00000526204 UBE2ZQ9H832 354 aaPredicted RBP18.96■□□□□ 0.63
VPS28-205ENST00000526204 MYOZ1Q9NP98 299 aaPredicted RBP18.96■□□□□ 0.63
VPS28-205ENST00000526204 TRBV11-1A0A0K0K1C0 115 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 I3L521 148 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 ZNF35P13682 527 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 FOSL2P15408 326 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 SLC25A53Q5H9E4 307 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 FAM209AQ5JX71 171 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 PAPD4Q6PIY7 484 aaKnown RBP18.95■□□□□ 0.62
VPS28-205ENST00000526204 IDO2Q6ZQW0 420 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 POFUT1Q9H488 388 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 SDHAF3Q9NRP4 125 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 KLRF1Q9NZS2 232 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 PPP4R1LQ9P1A2 415 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 RAB22AQ9UL26 194 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 IGKV1D-43A0A0B4J1Z2 117 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 ZNF736B4DX44 427 aaPredicted RBP18.95■□□□□ 0.62
VPS28-205ENST00000526204 H3BUI4 141 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 CD74P04233 296 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 C2orf68Q2NKX9 166 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 B3GNTL1Q67FW5 361 aaPredicted RBP18.95■□□□□ 0.62
VPS28-205ENST00000526204 C11orf88Q6PI97 169 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 KLHL24Q6TFL4 600 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 RFPL4BQ6ZWI9 263 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 SLC38A9Q8NBW4 561 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 WDR89Q96FK6 387 aaPredicted RBP18.95■□□□□ 0.62
VPS28-205ENST00000526204 DUSP15Q9H1R2 295 aaPredicted RBP18.95■□□□□ 0.62
VPS28-205ENST00000526204 SERINC1Q9NRX5 453 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 FAM206AQ9NX38 181 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 KLHL13Q9P2N7 655 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 CACNA1CQ13936 2221 aa18.95■□□□□ 0.62
VPS28-205ENST00000526204 TMEM82A0PJX8 343 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 TMEM200CA6NKL6 621 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 MEN1O00255 615 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 P2RY10O00398 339 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 SIX6O95475 246 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 FCER2P06734 321 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 PNLIPP16233 465 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 HSD11B1P28845 292 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 BIDP55957 195 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 DCDP81605 110 aaKnown RBP18.94■□□□□ 0.62
VPS28-205ENST00000526204 AANATQ16613 207 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 WDFY1Q8IWB7 410 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 EDAQ92838 391 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 SLAMF6Q96DU3 332 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 CHST6Q9GZX3 395 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 PCNX3Q9H6A9 2034 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 H3BML4 177 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 ARPC5O15511 151 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 RP2O75695 350 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 AMY2AP04746 511 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 OR4E1P0C645 316 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 BDKRB2P30411 391 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 EMP2P54851 167 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 SQSTM1Q13501 440 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 HLXQ14774 488 aaPredicted RBP18.94■□□□□ 0.62
VPS28-205ENST00000526204 SMAD2Q15796 467 aaKnown RBP18.94■□□□□ 0.62
VPS28-205ENST00000526204 THEM4Q5T1C6 240 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 CORO6Q6QEF8 472 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 ZNF813Q6ZN06 617 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 TMUB2Q71RG4 321 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 C11orf40Q8WZ69 217 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 CYB5R1Q9UHQ9 305 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 GDF2Q9UK05 429 aaPredicted RBP18.94■□□□□ 0.62
VPS28-205ENST00000526204 NUP50Q9UKX7 468 aa18.94■□□□□ 0.62
VPS28-205ENST00000526204 IGLV3-32A0A0A0MS00 114 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms