RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	ATG16L2	Q8NAA4	619 aa		13.17	□□□□□ -0.3
LMNA-223	ENST00000515459	NEIL1	Q96FI4	390 aa	Predicted RBP	13.17	□□□□□ -0.3
LMNA-223	ENST00000515459	RABEP2	Q9H5N1	569 aa		13.17	□□□□□ -0.3
LMNA-223	ENST00000515459	TNFRSF19	Q9NS68	423 aa		13.17	□□□□□ -0.3
LMNA-223	ENST00000515459	STARD10	Q9Y365	291 aa		13.17	□□□□□ -0.3
LMNA-223	ENST00000515459	CMYA5	Q8N3K9	4069 aa		13.17	□□□□□ -0.3
LMNA-223	ENST00000515459	CLPSL1	A2RUU4	121 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	ANGPT2	O15123	496 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	DOK2	O60496	412 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	NDUFA7	O95182	113 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	THRB	P10828	461 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	TNFRSF1B	P20333	461 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	BPIFB3	P59826	476 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	CTXN1	P60606	82 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	SCRN3	Q0VDG4	424 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	VMAC	Q2NL98	169 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	GPR157	Q5UAW9	335 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459		Q6YL49	198 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	CCDC80	Q76M96	950 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	NLRC3	Q7RTR2	1065 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	OR8B3	Q8NGG8	313 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	OR10A6	Q8NH74	314 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	ZNF420	Q8TAQ5	688 aa	Predicted RBP	13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	PTP4A1	Q93096	173 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	OR8B2	Q96RD0	313 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	PKP2	Q99959	881 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	NUDT16L1	Q9BRJ7	211 aa	Known RBP	13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	CHIA	Q9BZP6	476 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	MARCH7	Q9H992	704 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	EMC7	Q9NPA0	242 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	NOX4	Q9NPH5	578 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	POLE4	Q9NR33	117 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	C1RL	Q9NZP8	487 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	BAG5	Q9UL15	447 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	RAB21	Q9UL25	225 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	PRKDC	P78527	4128 aa	Known RBP	13.16	□□□□□ -0.3
LMNA-223	ENST00000515459	WNK1	Q9H4A3	2382 aa		13.16	□□□□□ -0.3
LMNA-223	ENST00000515459		A6NIZ1	184 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	SGCE	O43556	437 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	SHOX2	O60902	331 aa	Predicted RBP	13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	CYB5R3	P00387	301 aa	Predicted RBP	13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	RAC2	P15153	192 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	ERF	P50548	548 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	RAP1B	P61224	184 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	RAP1A	P62834	184 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	RELB	Q01201	579 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	TTMP	Q5BVD1	217 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	C1orf94	Q6P1W5	598 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	RHOU	Q7L0Q8	258 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	OR5AS1	Q8N127	324 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	TMEM86B	Q8N661	226 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	UBE2F	Q969M7	185 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	TLCD1	Q96CP7	247 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	MEGF10	Q96KG7	1140 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	TMEM246	Q9BRR3	403 aa		13.15	□□□□□ -0.3
LMNA-223	ENST00000515459	HTR3E	A5X5Y0	456 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	LRRC30	A6NM36	301 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	PIP5K1C	O60331	668 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	FSTL3	O95633	263 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	SCG5	P05408	212 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	IFI30	P13284	250 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	PITPNB	P48739	271 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	SRP9	P49458	86 aa	Known RBP	13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	GZMM	P51124	257 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	FGF12	P61328	243 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	NFYC	Q13952	458 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	PDCD1	Q15116	288 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	ZNF181	Q2M3W8	571 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	ZNF404	Q494X3	552 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	VASH1	Q7L8A9	365 aa	Predicted RBP	13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	IGFN1	Q86VF2	1251 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	FITM2	Q8N6M3	262 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	LRRC75A	Q8NAA5	344 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	OR10AD1	Q8NGE0	317 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	OR13G1	Q8NGZ3	307 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	BPIFA2	Q96DR5	249 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	FAM71F1	Q96KD3	344 aa	Predicted RBP	13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	SLC30A2	Q9BRI3	323 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459	CLN8	Q9UBY8	286 aa		13.14	□□□□□ -0.31
LMNA-223	ENST00000515459		J3QW42	95 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	OR1E2	P47887	323 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	RPL15	P61313	204 aa	Known RBP	13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	HLX	Q14774	488 aa	Predicted RBP	13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	C1orf87	Q8N0U7	546 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	OR8G5	Q8NG78	346 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	LRRC8C	Q8TDW0	803 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	SLC7A6	Q92536	515 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	RBM4B	Q9BQ04	359 aa	Known RBP	13.13	□□□□□ -0.31
LMNA-223	ENST00000515459	POMT1	Q9Y6A1	747 aa		13.13	□□□□□ -0.31
LMNA-223	ENST00000515459		H7C1C5	153 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	PHYH	O14832	338 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	MELTF	P08582	738 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	LCN6	P62502	163 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	ST3GAL3	Q11203	375 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	AQP6	Q13520	282 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	ANKDD1A	Q495B1	522 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	WDR25	Q64LD2	544 aa	Predicted RBP	13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	ASPHD2	Q6ICH7	369 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	OR2T2	Q6IF00	324 aa		13.12	□□□□□ -0.31
LMNA-223	ENST00000515459	FBXW12	Q6X9E4	464 aa		13.12	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms