RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ZNF593O00488 134 aaPredicted RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 ICMTO60725 284 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 CD8AP01732 235 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 CCL2P13500 99 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 ANPEPP15144 967 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 TUBG1P23258 451 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 EPHA2P29317 976 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 EVX1P49640 407 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 SELENOVP59797 346 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 EFNB1P98172 346 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 RCN1Q15293 331 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 EFNB3Q15768 340 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 ADIPOQQ15848 244 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 ELFN2Q5R3F8 820 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 SHFQ7M4L6 423 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 PAQR4Q8N4S7 273 aaPredicted RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 ZNF511Q8NB15 262 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 ZNRF4Q8WWF5 429 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 TRMT61AQ96FX7 289 aaKnown RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 C4orf45Q96LM5 186 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 INTS14Q96SY0 518 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 PITX2Q99697 317 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 HCAR1Q9BXC0 346 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 MARCH7Q9H992 704 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 TUBG2Q9NRH3 451 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 ZNF701Q9NV72 531 aaPredicted RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 H2AFY2Q9P0M6 372 aaPredicted RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 GDF2Q9UK05 429 aaPredicted RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 COMMD3-BMI1R4GMX3 469 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 PMF1-BGLAPU3KQ54 211 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 PRRC2AP48634 2157 aaKnown RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 TLX2O43763 284 aaPredicted RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 PRKYO43930 277 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 POLR2IP36954 125 aaKnown RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 CDC42P60953 191 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 SNRPD2P62316 118 aaKnown RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 DBPQ10586 325 aaPredicted RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 SWI5Q1ZZU3 235 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 KLHL12Q53G59 568 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 OTPQ5XKR4 325 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 C11orf71Q6IPW1 123 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 RGS7BPQ6MZT1 257 aaPredicted RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 CORO6Q6QEF8 472 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 LINC00346Q8IVM7 164 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 TCEANCQ8N8B7 351 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 TMEM163Q8TC26 289 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 TRUB1Q8WWH5 349 aaKnown RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 MRPL24Q96A35 216 aaKnown RBP12.3□□□□□ -0.44
NUP54-216ENST00000514901 COG8Q96MW5 612 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 RDH12Q96NR8 316 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 SLC29A1Q99808 456 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 GSX2Q9BZM3 304 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 CXXC4Q9H2H0 198 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 PLK3Q9H4B4 646 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 DCLRE1BQ9H816 532 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 WDR76Q9H967 626 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 TBCCD1Q9NVR7 557 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 ARFGEF3Q5TH69 2177 aa12.3□□□□□ -0.44
NUP54-216ENST00000514901 H3BSA7 217 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 J3QW42 95 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 ABHD16AO95870 558 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 LCKP06239 509 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 SPARCP09486 303 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 FAM157BP0CG42 384 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 SLC2A5P22732 501 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 RGS6P49758 472 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 ART1P52961 327 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 RPS7P62081 194 aaKnown RBP12.29□□□□□ -0.44
NUP54-216ENST00000514901 ELF3P78545 371 aaPredicted RBP12.29□□□□□ -0.44
NUP54-216ENST00000514901 MOGQ16653 247 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 MST1LQ2TV78 715 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 LCN1P1Q5VSP4 162 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 NXNL2Q5VZ03 156 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 ERI1Q8IV48 349 aaKnown RBP12.29□□□□□ -0.44
NUP54-216ENST00000514901 ZNF454Q8N9F8 522 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 OR8J1Q8NGP2 316 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 HRASLS5Q96KN8 279 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 TEAD3Q99594 435 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 ATF6BQ99941 703 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 ITGB1BP2Q9UKP3 347 aa12.29□□□□□ -0.44
NUP54-216ENST00000514901 SLC22A31A6NKX4 558 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 GPRIN2O60269 458 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 ZNF250P15622 560 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 WNT5AP41221 380 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 PTH2RP49190 550 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 NUDT6P53370 316 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 APOFQ13790 326 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 TRIP10Q15642 601 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 KRTAP27-1Q3LI81 207 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 ZNF718Q3SXZ3 478 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 ZIK1Q3SY52 487 aaPredicted RBP12.28□□□□□ -0.44
NUP54-216ENST00000514901 AADACL4Q5VUY2 407 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 SHEQ5VZ18 495 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 TMEM154Q6P9G4 183 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 LYPD4Q6UWN0 246 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 PRSS57Q6UWY2 283 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 CFAP77Q6ZQR2 320 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 RHOUQ7L0Q8 258 aa12.28□□□□□ -0.44
NUP54-216ENST00000514901 MEPCEQ7L2J0 689 aaKnown RBP12.28□□□□□ -0.44
NUP54-216ENST00000514901 DCXRQ7Z4W1 244 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms