RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ITGB4P16144 1822 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 DUOX1Q9NRD9 1551 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TRAV39A0A0B4J263 110 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TRBV11-1A0A0K0K1C0 115 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 A0A1W2PPH5 198 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 C1orf226A1L170 272 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 J3QR06 171 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 RNASET2O00584 256 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 BUD23O43709 281 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC25A14O95258 325 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 HSPB1P04792 205 aaKnown RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 HAPLN1P10915 354 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC25A4P12235 298 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MMP9P14780 707 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ZNF16P17020 682 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 OR1E2P47887 323 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GSK3AP49840 483 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 MFAP4P55083 255 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CLRN1P58418 232 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SEC11AP67812 179 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 PLCXD2Q0VAA5 305 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 RIGQ13278 110 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.29□□□□□ -1.88
USP53-205ENST00000509769 CYHR1Q6ZMK1 362 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 CBLL1Q75N03 491 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 IRF2BP1Q8IU81 584 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SYS1Q8N2H4 156 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 C2CD4AQ8NCU7 369 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 OR6J1Q8NGC5 347 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR51S1Q8NGJ8 323 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 KCNE4Q8WWG9 221 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 ALG3Q92685 438 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 C5orf30Q96GV9 206 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 OR8B4Q96RC9 309 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GPX7Q96SL4 187 aaPredicted RBP3.29□□□□□ -1.88
USP53-205ENST00000509769 MMP19Q99542 508 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GPR21Q99679 349 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TMEM167BQ9NRX6 74 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 GPATCH2LQ9NWQ4 482 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC45A2Q9UMX9 530 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SLC35A3Q9Y2D2 325 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 NPTNQ9Y639 398 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 WSB1Q9Y6I7 421 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 SCN11AQ9UI33 1791 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 TJP1Q07157 1748 aa3.29□□□□□ -1.88
USP53-205ENST00000509769 F8VP50 259 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 SYT5O00445 386 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 GEMIN2O14893 280 aaKnown RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 GRM6O15303 877 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 MPPED1O15442 326 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 MBTPS2O43462 519 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 LRCH4O75427 683 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 FGF18O76093 207 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 MPZL1O95297 269 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 BCHEP06276 602 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 FAM87AP0C7U9 286 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 FTH1P19P0C7X4 201 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 SMIM18P0DKX4 95 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 TMEM225BP0DP42 221 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 ZNF26P17031 533 aaPredicted RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 TYRP1P17643 537 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 RPS4Y1P22090 263 aaKnown RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 FCGR2CP31995 323 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 OR1D2P34982 312 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 MEOX1P50221 254 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 INCA1Q0VD86 236 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 GAGE1Q13065 139 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 ZNF385BQ569K4 471 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 C6orf136Q5SQH8 315 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 RNLSQ5VYX0 342 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 OR2A2Q6IF42 318 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 SLC27A1Q6PCB7 646 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 TMEM65Q6PI78 240 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 HHIPL2Q6UWX4 724 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 CELF2-AS1Q8N7Q2 184 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 CLEC1AQ8NC01 280 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 HGDQ93099 445 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 LHX4Q969G2 390 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 OR2A5Q96R48 311 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 RAB40CQ96S21 281 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 SEMA3CQ99985 751 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 MARVELD1Q9BSK0 173 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 EBPLQ9BY08 206 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 ZNF576Q9H609 170 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 JKAMPQ9P055 326 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 ATXN7L1Q9ULK2 861 aaPredicted RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 A4GNTQ9UNA3 340 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 COA3Q9Y2R0 106 aaPredicted RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 CHTOPQ9Y3Y2 248 aaKnown RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 CHST2Q9Y4C5 530 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 CDC14CA4D256 554 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 SOWAHBA6NEL2 793 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 CRYM-AS1A6NIL9 109 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 OR6C76A6NM76 312 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 GSTZ1O43708 216 aaPredicted RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 FZD6O60353 706 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 KLF7O75840 302 aaPredicted RBP3.28□□□□□ -1.88
USP53-205ENST00000509769 PCDH8O95206 1070 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 APBB3O95704 486 aa3.28□□□□□ -1.88
USP53-205ENST00000509769 TSPAN13O95857 204 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms