RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 SMAP2Q8WU79 429 aaPredicted RBP12.64□□□□□ -0.39
BRCA1-223ENST00000494123 MARVELD3Q96A59 401 aa12.64□□□□□ -0.39
BRCA1-223ENST00000494123 MAP6Q96JE9 813 aa12.64□□□□□ -0.39
BRCA1-223ENST00000494123 ANKRD60Q9BZ19 345 aa12.64□□□□□ -0.39
BRCA1-223ENST00000494123 AMBNQ9NP70 447 aa12.64□□□□□ -0.39
BRCA1-223ENST00000494123 RPL36Q9Y3U8 105 aaKnown RBP12.64□□□□□ -0.39
BRCA1-223ENST00000494123 RNF115Q9Y4L5 304 aa12.64□□□□□ -0.39
BRCA1-223ENST00000494123 TMEM14AQ9Y6G1 99 aa12.64□□□□□ -0.39
BRCA1-223ENST00000494123 C5orf49A4QMS7 147 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 WBP4O75554 376 aaKnown RBP12.63□□□□□ -0.39
BRCA1-223ENST00000494123 APOL3O95236 402 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 LYNP07948 512 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 COX5BP10606 129 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 DBTP11182 482 aaKnown RBP12.63□□□□□ -0.39
BRCA1-223ENST00000494123 CCL2P13500 99 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 GALK2Q01415 458 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF91Q05481 1191 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 SPOCK1Q08629 439 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 CDK5R2Q13319 367 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 TAF13Q15543 124 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 SMN1Q16637 294 aaKnown RBP12.63□□□□□ -0.39
BRCA1-223ENST00000494123 ADAM5Q6NVV9 412 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 CDC20BQ86Y33 519 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 SLAMF6Q96DU3 332 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 MNTQ99583 582 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 ATF6BQ99941 703 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 ABHD6Q9BV23 337 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 CENPMQ9NSP4 180 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 ATPIF1Q9UII2 106 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 POU2F3Q9UKI9 436 aa12.63□□□□□ -0.39
BRCA1-223ENST00000494123 HEATR1Q9H583 2144 aaKnown RBP12.63□□□□□ -0.39
BRCA1-223ENST00000494123 IGHV2OR16-5A0A0B4J2B6 119 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ATP6V1G2-DDX39BF2Z307 99 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 SYNGR3O43761 229 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 MYF6P23409 242 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 HCCSP53701 268 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 TLE4Q04727 773 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ECH1Q13011 328 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF787Q6DD87 383 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 SPATC1Q76KD6 591 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 TMEM200AQ86VY9 491 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 OR10H4Q8NGA5 316 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ST7LQ8TDW4 575 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 CNBD2Q96M20 576 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 HS3ST6Q96QI5 342 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 COQ7Q99807 217 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 COPS4Q9BT78 406 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 LOC100509620A0A075B734 347 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 OR6C6A6NF89 314 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF878C9JN71 531 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF670-ZNF695F2Z2N8 137 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 PHYHO14832 338 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 CALCRP30988 508 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 SLC15A1P46059 708 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 KLHL22Q53GT1 634 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 KRT80Q6KB66 452 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF704Q6ZNC4 412 aaPredicted RBP12.62□□□□□ -0.39
BRCA1-223ENST00000494123 OR4F15Q8NGB8 312 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 SPTSSAQ969W0 71 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 C14orf79Q96F83 325 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 POM121L2Q96KW2 1035 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 TBX5Q99593 518 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 PNRC2Q9NPJ4 139 aaKnown RBP12.62□□□□□ -0.39
BRCA1-223ENST00000494123 EIF3KQ9UBQ5 218 aaKnown RBP12.62□□□□□ -0.39
BRCA1-223ENST00000494123 KLHDC2Q9Y2U9 406 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 SPEF1Q9Y4P9 236 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 PCDHGB1Q9Y5G3 927 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 ATP23Q9Y6H3 246 aa12.62□□□□□ -0.39
BRCA1-223ENST00000494123 CTAG2O75638 210 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 FADS2O95864 444 aaKnown RBP12.61□□□□□ -0.39
BRCA1-223ENST00000494123 H2BFMP0C1H6 154 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 OR2T7P0C7T2 308 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 ZNF35P13682 527 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 ALOX5APP20292 161 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 LOXP28300 417 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-223ENST00000494123 HSD11B1P28845 292 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 SSTR2P30874 369 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 CXCR4P61073 352 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 ACTC1P68032 377 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 ACTA1P68133 377 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 RAB40BQ12829 278 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 KCTD18Q6PI47 426 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-223ENST00000494123 ARL9Q6T311 187 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 KRT77Q7Z794 578 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-223ENST00000494123 KBTBD8Q8NFY9 601 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 OR10S1Q8NGN2 331 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 OR2T27Q8NH04 317 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 FBLIM1Q8WUP2 373 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 RNF133Q8WVZ7 376 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 ASB17Q8WXJ9 295 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 SLC7A6Q92536 515 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 LGALS12Q96DT0 336 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 AMELYQ99218 206 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 TTTY10Q9BZA0 68 aa12.61□□□□□ -0.39
BRCA1-223ENST00000494123 CLEC4MQ9H2X3 399 aaPredicted RBP12.61□□□□□ -0.39
BRCA1-223ENST00000494123 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
BRCA1-223ENST00000494123 IRGMA1A4Y4 181 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 F5H5K5 113 aa12.6□□□□□ -0.39
BRCA1-223ENST00000494123 FAM20BO75063 409 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms