RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PARP12Q9H0J9 701 aaKnown RBP1.11□□□□□ -2.23
SMC4-220ENST00000488017 TMEM9BQ9NQ34 198 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 FAM49BQ9NUQ9 324 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 PSMC3IPQ9P2W1 217 aaPredicted RBP1.11□□□□□ -2.23
SMC4-220ENST00000488017 TMED5Q9Y3A6 229 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 IKBKGQ9Y6K9 419 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 S4R3C0 116 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 PTPRTO14522 1441 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 TSPOAP1O95153 1857 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 SDK2Q58EX2 2172 aa1.11□□□□□ -2.23
SMC4-220ENST00000488017 ZCCHC6Q5VYS8 1495 aaKnown RBP1.11□□□□□ -2.23
SMC4-220ENST00000488017 USP47Q96K76 1375 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SHANK1Q9Y566 2161 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 AKNAQ7Z591 1439 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 C5orf63A6NC05 138 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 LRRIQ3A6PVS8 624 aaPredicted RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 MPHOSPH10O00566 681 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 AIM2O14862 343 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CLOCKO15516 846 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 YIF1AO95070 293 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CCNE2O96020 404 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 APCSP02743 223 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CD3GP09693 182 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 ACSM4P0C7M7 580 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 OR8U9P0C7N5 309 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 ZNF24P17028 368 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 GGT1P19440 569 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 DCKP27707 260 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SSTR5P35346 364 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 OPRK1P41145 380 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CSNK1EP49674 416 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 ACLYP53396 1101 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 UBE2NP61088 152 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 ADARB1P78563 741 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 PITPNAQ00169 270 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CHRNA6Q15825 494 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SSX2Q16385 188 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SLC8B1Q6J4K2 584 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 NANOGNBQ7Z5D8 188 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CALHM1Q8IU99 346 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 OR6N1Q8NGY5 312 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SLC2A14Q8TDB8 520 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 ACMSDQ8TDX5 336 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 LRRC29Q8WV35 223 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 ZNF488Q96MN9 340 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 COL21A1Q96P44 957 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 DOK1Q99704 481 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SULT4A1Q9BR01 284 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 TIMM29Q9BSF4 260 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 OR52D1Q9H346 318 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 ANKRA2Q9H9E1 313 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 EDA2RQ9HAV5 297 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SLC38A10Q9HBR0 1119 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 SAMSN1Q9NSI8 373 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 DDX19AQ9NUU7 478 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 UXTQ9UBK9 157 aaPredicted RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 HPCAL4Q9UM19 191 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 CARHSP1Q9Y2V2 147 aaKnown RBP1.1□□□□□ -2.23
SMC4-220ENST00000488017 UBIAD1Q9Y5Z9 338 aa1.1□□□□□ -2.23
SMC4-220ENST00000488017 AHDC1Q5TGY3 1603 aaPredicted RBP1.09□□□□□ -2.23
SMC4-220ENST00000488017 HEATR9A2RTY3 570 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 ZNF850A8MQ14 1090 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 A8MUU9 505 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 H0Y8G0 127 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 H0YJW9 148 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 EIF3HO15372 352 aaKnown RBP eCLIP1.09□□□□□ -2.23
SMC4-220ENST00000488017 RNF13O43567 381 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 KLHL41O60662 606 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 RDH16O75452 317 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CDRT1O95170 752 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 HLA-DQA1P01909 254 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 IL4P05112 153 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 PABPC4LP0CB38 370 aaKnown RBP1.09□□□□□ -2.23
SMC4-220ENST00000488017 RAB3AP20336 220 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 WARSP23381 471 aaKnown RBP1.09□□□□□ -2.23
SMC4-220ENST00000488017 F2RP25116 425 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CXCL12P48061 93 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 HCAR3P49019 387 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 SULT1E1P49888 294 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 P2RX1P51575 399 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CDKN2DP55273 166 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CDH6P55285 790 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 VSX2P58304 361 aaPredicted RBP1.09□□□□□ -2.23
SMC4-220ENST00000488017 PPP1R7Q15435 360 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 OR7A5Q15622 319 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 ZNF726P1Q15940 193 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 XKR7Q5GH72 579 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 GPR107Q5VW38 600 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 KRTAP5-10Q6L8G5 202 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 ZFP1Q6P2D0 407 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 C12orf54Q6X4T0 127 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CERS6Q6ZMG9 384 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 MBOAT1Q6ZNC8 495 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 WDFY1Q8IWB7 410 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 CMTM1Q8IZ96 169 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 NPWQ8N729 165 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 OR7G2Q8NG99 324 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 OR56B2PQ8NGI1 322 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 OR2A1Q8NGT9 310 aa1.09□□□□□ -2.23
SMC4-220ENST00000488017 LINC01560Q8TB33 94 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms