RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 EI24O14681 340 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 RER1O15258 196 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 SYNGR3O43761 229 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 CD8AP01732 235 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 SCG5P05408 212 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 GYPBP06028 91 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 LCKP06239 509 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 SPARCP09486 303 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 CSF3P09919 207 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 FAM157BP0CG42 384 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 GCH1P30793 250 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 GGT2P36268 569 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 SLC15A1P46059 708 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 NUDT6P53370 316 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 KLF3P57682 345 aaPredicted RBP12.62□□□□□ -0.39
LIMS3-205ENST00000487150 CDC42P60953 191 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 RPS7P62081 194 aaKnown RBP12.62□□□□□ -0.39
LIMS3-205ENST00000487150 TESK1Q15569 626 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 MEP1BQ16820 701 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 PCK2Q16822 640 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 SWI5Q1ZZU3 235 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 ZNF718Q3SXZ3 478 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 KLHL12Q53G59 568 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 ZMAT1Q5H9K5 638 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 Q5PR19 223 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 GID4Q8IVV7 300 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 ZNF454Q8N9F8 522 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 OR5L1Q8NGL2 311 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 SNX33Q8WV41 574 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 RDH12Q96NR8 316 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 RAB1BQ9H0U4 201 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 OR51V1Q9H2C8 321 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 RIBC2Q9H4K1 309 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 MYOZ1Q9NP98 299 aaPredicted RBP12.62□□□□□ -0.39
LIMS3-205ENST00000487150 H2AFY2Q9P0M6 372 aaPredicted RBP12.62□□□□□ -0.39
LIMS3-205ENST00000487150 TMEFF2Q9UIK5 374 aaPredicted RBP12.62□□□□□ -0.39
LIMS3-205ENST00000487150 CADP27708 2225 aa12.62□□□□□ -0.39
LIMS3-205ENST00000487150 CREBBPQ92793 2442 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 AKAP6Q13023 2319 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 LOC100509620A0A075B734 347 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 SLC22A31A6NKX4 558 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 FAM183AA6NL82 134 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 GPRIN2O60269 458 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 BAG2O95816 211 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 APOC1P02654 83 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 CCL2P13500 99 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 ZNF250P15622 560 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 DSCR9P59020 149 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 PPP1CBP62140 327 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 CCDC92Q53HC0 331 aaPredicted RBP12.61□□□□□ -0.39
LIMS3-205ENST00000487150 TMEM236Q5W0B7 351 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 C12orf73Q69YU5 71 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 ZBTB49Q6ZSB9 765 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 RHOUQ7L0Q8 258 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 CPOQ8IVL8 374 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 CBR4Q8N4T8 237 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 OR51L1Q8NGJ5 315 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 OR1J1Q8NGS3 322 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 OR6N2Q8NGY6 317 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 ABHD4Q8TB40 342 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 SYNPRQ8TBG9 265 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 TMEM163Q8TC26 289 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 APOBEC3DQ96AK3 386 aaPredicted RBP12.61□□□□□ -0.39
LIMS3-205ENST00000487150 MS4A5Q9H3V2 200 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 MARCH7Q9H992 704 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 HINT3Q9NQE9 182 aaKnown RBP12.61□□□□□ -0.39
LIMS3-205ENST00000487150 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
LIMS3-205ENST00000487150 MRPL22Q9NWU5 206 aaKnown RBP12.61□□□□□ -0.39
LIMS3-205ENST00000487150 IMPAD1Q9NX62 359 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 ROS1P08922 2347 aa12.61□□□□□ -0.39
LIMS3-205ENST00000487150 RAI1Q7Z5J4 1906 aaPredicted RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 PRR14LQ5THK1 2151 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 ZNF878C9JN71 531 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 MITFO75030 526 aaPredicted RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 GPANK1O95872 356 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 CLUP10909 449 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 LIPAP38571 399 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 CDKN1AP38936 164 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 EFNA4P52798 201 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 TPTEP56180 551 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 GRB2P62993 217 aaKnown RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 TAF13Q15543 124 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 NKPD1Q17RQ9 610 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 LINC01590Q5TEZ4 76 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 NXNL2Q5VZ03 156 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 MBNL2Q5VZF2 373 aaKnown RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 CORO6Q6QEF8 472 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 CFAP77Q6ZQR2 320 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 DCXRQ7Z4W1 244 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 ERI1Q8IV48 349 aaKnown RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 LINC00346Q8IVM7 164 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 PAQR4Q8N4S7 273 aaPredicted RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 OR8J1Q8NGP2 316 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 TRUB1Q8WWH5 349 aaKnown RBP12.6□□□□□ -0.39
LIMS3-205ENST00000487150 PTP4A1Q93096 173 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 RFKQ969G6 155 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 COPS4Q9BT78 406 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 VCXQ9H320 206 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 TOR3AQ9H497 397 aa12.6□□□□□ -0.39
LIMS3-205ENST00000487150 SP140LQ9H930 580 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms