RNA–Protein interactions for RNA: ENST00000485424.1

UBA3-210, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 652 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-210	ENST00000485424	LIMS1	P48059	325 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	RPS6KA3	P51812	740 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	PSG7	Q13046	419 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	MEST	Q5EB52	335 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	GPR139	Q6DWJ6	353 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	DNM1P34	Q6PK57	102 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	TMPRSS11F	Q6ZWK6	438 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	USP43	Q70EL4	1123 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	SPIC	Q8N5J4	248 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	OR5L1	Q8NGL2	311 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	FAM216A	Q8WUB2	273 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	ZMYND19	Q96E35	227 aa	Predicted RBP	11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	TMPRSS13	Q9BYE2	586 aa		11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	PURG	Q9UJV8	347 aa	Known RBP	11.22	□□□□□ -0.61
UBA3-210	ENST00000485424	TMEM89	A2RUT3	159 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	SOCS2	O14508	198 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	CDC42EP2	O14613	210 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	FFAR1	O14842	300 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	NCK1	P16333	377 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	EGR1	P18146	543 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	ADRA2C	P18825	462 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	GSK3B	P49841	420 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	ARMCX4	Q5H9R4	360 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	RBMS3	Q6XE24	437 aa	Known RBP	11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	C3orf56	Q8N813	242 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	RASD2	Q96D21	266 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	CMBL	Q96DG6	245 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	CCDC134	Q9H6E4	229 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	NMNAT1	Q9HAN9	279 aa	Predicted RBP	11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	TMEM106B	Q9NUM4	274 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	GMPR2	Q9P2T1	348 aa	Known RBP	11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	SAMD4A	Q9UPU9	718 aa	Known RBP	11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	COA3	Q9Y2R0	106 aa	Predicted RBP	11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	ENPP4	Q9Y6X5	453 aa		11.21	□□□□□ -0.61
UBA3-210	ENST00000485424	CTLA4	P16410	223 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	RHCE	P18577	417 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	FUT4	P22083	530 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	RGS6	P49758	472 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	LSM6	P62312	80 aa	Known RBP	11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	CDK5R2	Q13319	367 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	TMEM255A	Q5JRV8	349 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	GLYAT	Q6IB77	296 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	PGM2L1	Q6PCE3	622 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	HACD2	Q6Y1H2	254 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	VASH1	Q7L8A9	365 aa	Predicted RBP	11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	FAM122B	Q7Z309	247 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	ADCK1	Q86TW2	530 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	JAZF1	Q86VZ6	243 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	GLB1L2	Q8IW92	636 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	ATG16L2	Q8NAA4	619 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	FAM156A	Q8NDB6	213 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	PTP4A1	Q93096	173 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	CMTM5	Q96DZ9	223 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	RSRC1	Q96IZ7	334 aa	Known RBP	11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	SAMD8	Q96LT4	415 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	MRI1	Q9BV20	369 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	SYT4	Q9H2B2	425 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	ADA2	Q9NZK5	511 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	ASH2L	Q9UBL3	628 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	IL19	Q9UHD0	177 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	EGFL7	Q9UHF1	273 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	KLHL21	Q9UJP4	597 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	PPP1R3C	Q9UQK1	317 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	STARD10	Q9Y365	291 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	IER3IP1	Q9Y5U9	82 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	VWF	P04275	2813 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424	CMYA5	Q8N3K9	4069 aa		11.2	□□□□□ -0.62
UBA3-210	ENST00000485424		A0A1W2PRQ8	180 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	OR6C6	A6NF89	314 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	UNC119B	A6NIH7	251 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	PRSS23	O95084	383 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	REN	P00797	406 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	SCG5	P05408	212 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	KITLG	P21583	273 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	CRABP1	P29762	137 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	SMIM11A	P58511	58 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	BTG1	P62324	171 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	FHL1	Q13642	323 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	DGCR6	Q14129	220 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	SLC27A4	Q6P1M0	643 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	DPY19L2P2	Q6ZN68	376 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	OR5AS1	Q8N127	324 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	MUC20	Q8N307	709 aa	Predicted RBP	11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	GJC3	Q8NFK1	279 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	OR1F12	Q8NHA8	337 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	SLC7A13	Q8TCU3	470 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	ITLN1	Q8WWA0	313 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	SLC6A7	Q99884	636 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	NTN4	Q9HB63	628 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	NRIP3	Q9NQ35	241 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	DDX28	Q9NUL7	540 aa	Known RBP	11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	PTTG3P	Q9NZH4	202 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	IL20RA	Q9UHF4	553 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424	SIGLEC7	Q9Y286	467 aa		11.19	□□□□□ -0.62
UBA3-210	ENST00000485424		J3QW42	95 aa		11.18	□□□□□ -0.62
UBA3-210	ENST00000485424	IFNL4	K9M1U5	179 aa		11.18	□□□□□ -0.62
UBA3-210	ENST00000485424	IGHV2-70	P01814	119 aa		11.18	□□□□□ -0.62
UBA3-210	ENST00000485424	RAC2	P15153	192 aa		11.18	□□□□□ -0.62
UBA3-210	ENST00000485424	NOS3	P29474	1203 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms