RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 YIPF7Q8N8F6 280 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZNF680Q8NEM1 530 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 PROKR2Q8NFJ6 384 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TTLQ8NG68 377 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 OR52K1Q8NGK4 314 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 JOSD2Q8TAC2 188 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TEX47Q8TBZ9 253 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ANKRD49Q8WVL7 239 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 BCL2L2Q92843 193 aaPredicted RBP4.42□□□□□ -1.7
USP40-213ENST00000483216 HGDQ93099 445 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 MSANTD3Q96H12 275 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 DIRAS2Q96HU8 199 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 HPDLQ96IR7 371 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 PPP1R36Q96LQ0 422 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 GPR137Q96N19 417 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZNF382Q96SR6 550 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 MBOAT4Q96T53 435 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 C19orf43Q9BQ61 176 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 TBCDQ9BTW9 1192 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 DPY30Q9C005 99 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 DERL2Q9GZP9 239 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 SLC26A1Q9H2B4 701 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 MFSD1Q9H3U5 465 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 RIBC2Q9H4K1 309 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 NARFLQ9H6Q4 476 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 C8orf33Q9H7E9 229 aaPredicted RBP4.42□□□□□ -1.7
USP40-213ENST00000483216 Q9HAA7 133 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 IL1RL2Q9HB29 575 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 NTN4Q9HB63 628 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 ZNF302Q9NR11 478 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 MLXQ9UH92 298 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 DNAJC15Q9Y5T4 150 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 NUBP2Q9Y5Y2 271 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 LCTP09848 1927 aa4.42□□□□□ -1.7
USP40-213ENST00000483216 DOCK5Q9H7D0 1870 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 A0A0G2JMZ2 1700 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 A0A096LPI6 279 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 OR6C65A6NJZ3 312 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 YJEFN3A6XGL0 299 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 C2orf74A8MZ97 194 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 B4DXG7 233 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 FXYD1O00168 92 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 HMGB3O15347 200 aaKnown RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 LRRTM2O43300 516 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 LYRM1O43325 122 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 CACNG3O60359 315 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 TSC22D2O75157 780 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 B3GALNT1O75752 331 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SEMA3DO95025 777 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 OR5F1O95221 314 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 CLIC3O95833 236 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SMIM6P0DI80 62 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 CD1EP15812 388 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 UGT2B7P16662 529 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 LCN1P31025 176 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SHMT2P34897 504 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 GGT2P36268 569 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 POLR2IP36954 125 aaKnown RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 NKX2-5P52952 324 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 LSM3P62310 102 aaKnown RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 PSPHP78330 225 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 GBE1Q04446 702 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 MLLT11Q13015 90 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 CRMP1Q14194 572 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 GNA13Q14344 377 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 GK2Q14410 553 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 LTB4RQ15722 352 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 NDUFA9Q16795 377 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 DCAF4L1Q3SXM0 396 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 CDNFQ49AH0 187 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SLC22A6Q4U2R8 563 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 C14orf28Q4W4Y0 310 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 UNC50Q53HI1 259 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 HES5Q5TA89 166 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SLC39A4Q6P5W5 647 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 ISLR2Q6UXK2 745 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 FAM183BPQ6ZVS7 135 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 HSD17B13Q7Z5P4 300 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 COMMD7Q86VX2 200 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 CYP4Z1Q86W10 505 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 FUNDC1Q8IVP5 155 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 STHQ8IWL8 128 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SKA3Q8IX90 412 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SLC38A6Q8IZM9 456 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 Q8N402 240 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 ARL14Q8N4G2 192 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 ATPAF2Q8N5M1 289 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SETD7Q8WTS6 366 aaKnown RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 SLC25A46Q96AG3 418 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SGK3Q96BR1 496 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 ZBED6CLQ96FA7 236 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 RNF170Q96K19 258 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 MCCC1Q96RQ3 725 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 MGLLQ99685 303 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 GINS4Q9BRT9 223 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SRRQ9GZT4 340 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SLC25A19Q9HC21 320 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 CHRAC1Q9NRG0 131 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 C1orf109Q9NX04 203 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 FBXL12Q9NXK8 326 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms