RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ELFN2Q5R3F8 820 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 SPATC1Q76KD6 591 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 VASH1Q7L8A9 365 aaPredicted RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 FAM169BQ8N8A8 192 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 OR10S1Q8NGN2 331 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 OR1F12Q8NHA8 337 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 ST7LQ8TDW4 575 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 IPCEF1Q8WWN9 437 aaPredicted RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 ASB17Q8WXJ9 295 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 MYDGFQ969H8 173 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 SLAMF6Q96DU3 332 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 TMEM80Q96HE8 168 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 ZNF75AQ96N20 296 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 DACH2Q96NX9 599 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 AMELYQ99218 206 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 COPS4Q9BT78 406 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 TTTY10Q9BZA0 68 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 MOV10Q9HCE1 1003 aaKnown RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 FKBP14Q9NWM8 211 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 CRNNQ9UBG3 495 aaPredicted RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 FBXL3Q9UKT7 428 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 BLOC1S6Q9UL45 172 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 A1L4Q6 167 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 CASKO14936 926 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 SYNGR3O43761 229 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 PTHP01270 115 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 IGKV3-15P01624 115 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 IGHA1P01876 353 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 SERPINA5P05154 406 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 CELA3BP08861 270 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 ZNF14P17017 642 aaPredicted RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 EEF1B2P24534 225 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 APEX1P27695 318 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 APLNRP35414 380 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 HTR5AP47898 357 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 SLC35A2P78381 396 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 MVKQ03426 396 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 ZNF85Q03923 595 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 KCTD18Q6PI47 426 aaPredicted RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 ZNF322Q6U7Q0 402 aaPredicted RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 MEX3BQ6ZN04 569 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 SSX6Q7RTT6 188 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 LHFPL3Q86UP9 236 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 DMRTC2Q8IXT2 367 aaPredicted RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 RFLNBQ8N5W9 214 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 CPEB3Q8NE35 698 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 RNF133Q8WVZ7 376 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 SGCDQ92629 289 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 MS4A3Q96HJ5 214 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 HDHD2Q9H0R4 259 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 DUSP21Q9H596 190 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 NGBQ9NPG2 151 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 PNRC2Q9NPJ4 139 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 INPP5EQ9NRR6 644 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 PAK1IP1Q9NWT1 392 aaPredicted RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 CHCHD3Q9NX63 227 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 NPAP1Q9NZP6 1156 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 ERVK-18Q9QC07 812 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 DIMT1Q9UNQ2 313 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 EXOSC1Q9Y3B2 195 aaKnown RBP10.64□□□□□ -0.71
SDC1-206ENST00000482879 ROS1P08922 2347 aa10.64□□□□□ -0.71
SDC1-206ENST00000482879 PLCE1Q9P212 2302 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 IGHV1-18A0A0C4DH31 117 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 OR6C6A6NF89 314 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 PRR32B1ATL7 298 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 ZNF878C9JN71 531 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 PSMD9O00233 223 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 MAGEB4O15481 346 aaPredicted RBP10.63□□□□□ -0.71
SDC1-206ENST00000482879 RGS10O43665 173 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 CLDN1O95832 211 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 IGLV1-44P01699 117 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 CDK1P06493 297 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 ADRA2AP08913 450 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 H2BFMP0C1H6 154 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 CECR9P0C854 216 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 COX5BP10606 129 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 EPXP11678 715 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 IGFBP2P18065 325 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 MYL12AP19105 171 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 STOMP27105 288 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 C21orf33P30042 268 aaPredicted RBP10.63□□□□□ -0.71
SDC1-206ENST00000482879 GDI2P50395 445 aaKnown RBP10.63□□□□□ -0.71
SDC1-206ENST00000482879 ETV1P50549 477 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 CHN2P52757 468 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 ECH1Q13011 328 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 GALEQ14376 348 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 C3orf36Q3SXR2 165 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 SEZ6L2Q6UXD5 910 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 LRRN1Q6UXK5 716 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 KRT77Q7Z794 578 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.63□□□□□ -0.71
SDC1-206ENST00000482879 ZNF584Q8IVC4 421 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 SLC30A7Q8NEW0 376 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 OR1J2Q8NGS2 313 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 SNX33Q8WV41 574 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 MRPL48Q96GC5 212 aaKnown RBP10.63□□□□□ -0.71
SDC1-206ENST00000482879 OR8B4Q96RC9 309 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 COQ7Q99807 217 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 ATF6BQ99941 703 aa10.63□□□□□ -0.71
SDC1-206ENST00000482879 JAM3Q9BX67 310 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms