RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 CCDC134Q9H6E4 229 aa11.42□□□□□ -0.58
CHD3-209ENST00000473376 CMTM6Q9NX76 183 aa11.42□□□□□ -0.58
CHD3-209ENST00000473376 PLEK2Q9NYT0 353 aa11.42□□□□□ -0.58
CHD3-209ENST00000473376 NUP50Q9UKX7 468 aa11.42□□□□□ -0.58
CHD3-209ENST00000473376 PPP1R3CQ9UQK1 317 aa11.42□□□□□ -0.58
CHD3-209ENST00000473376 LRCH1Q9Y2L9 728 aa11.42□□□□□ -0.58
CHD3-209ENST00000473376 CXCR6O00574 342 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 CDC42EP2O14613 210 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 DOK2O60496 412 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 KHDRBS3O75525 346 aaKnown RBP11.41□□□□□ -0.58
CHD3-209ENST00000473376 NDUFB2O95178 105 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 TXNDC12O95881 172 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 HKR1P10072 659 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 EGR1P18146 543 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 ZFP36P26651 326 aaKnown RBP11.41□□□□□ -0.58
CHD3-209ENST00000473376 RPL4P36578 427 aaKnown RBP11.41□□□□□ -0.58
CHD3-209ENST00000473376 HTR5AP47898 357 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 UBA52P62987 128 aaKnown RBP11.41□□□□□ -0.58
CHD3-209ENST00000473376 LCN2P80188 198 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 C8orf82Q6P1X6 216 aaPredicted RBP11.41□□□□□ -0.58
CHD3-209ENST00000473376 C9orf139Q6ZV77 190 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 VTCN1Q7Z7D3 282 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 OR13C2Q8NGS9 318 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 CMBLQ96DG6 245 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 ZNF570Q96NI8 536 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 SIGLEC11Q96RL6 698 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 SLC6A7Q99884 636 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 MRI1Q9BV20 369 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 ZNF747Q9BV97 191 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 KRCC1Q9NPI7 259 aaPredicted RBP11.41□□□□□ -0.58
CHD3-209ENST00000473376 FGFR1OP2Q9NVK5 253 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 RPS6KA6Q9UK32 745 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 SIGLEC7Q9Y286 467 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 INSIG2Q9Y5U4 225 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 SNX13Q9Y5W8 968 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 AUP1Q9Y679 476 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 ENPP4Q9Y6X5 453 aa11.41□□□□□ -0.58
CHD3-209ENST00000473376 TANC2Q9HCD6 1990 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 TMEM178BH3BS89 294 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 IMPA2O14732 288 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 SCG5P05408 212 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 SBK2P0C263 348 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 PRTN3P24158 256 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 CRABP1P29762 137 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 HIST1H3AP68431 136 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 LIPEQ05469 1076 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 PAX8Q06710 450 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 ESCO2Q56NI9 601 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 AWAT1Q58HT5 328 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 MESTQ5EB52 335 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 ARMCX4Q5H9R4 360 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 PRR31Q5SQ13 230 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 HIST2H3PS2Q5TEC6 136 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 SHISA2Q6UWI4 295 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 LRRN1Q6UXK5 716 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 DPY19L2P2Q6ZN68 376 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 Q6ZR03 302 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 HIST2H3AQ71DI3 136 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 FKBP9P1Q75LS8 142 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 IGFN1Q86VF2 1251 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 CELF2-AS1Q8N7Q2 184 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 GJC3Q8NFK1 279 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 OR2Z1Q8NG97 314 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 OR13G1Q8NGZ3 307 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 OR1F12Q8NHA8 337 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 SLC7A13Q8TCU3 470 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 ERGIC1Q969X5 290 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 APOBEC3DQ96AK3 386 aaPredicted RBP11.4□□□□□ -0.58
CHD3-209ENST00000473376 Q96M85 177 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 COQ7Q99807 217 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 HDHD2Q9H0R4 259 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 ZNF696Q9H7X3 374 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 EFCAB1Q9HAE3 211 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 ESM1Q9NQ30 184 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 UBAP1Q9NZ09 502 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 EGFL7Q9UHF1 273 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 STARD10Q9Y365 291 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 ADAM18Q9Y3Q7 739 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 WNK2Q9Y3S1 2297 aa11.4□□□□□ -0.58
CHD3-209ENST00000473376 POM121CA8CG34 1229 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 CCDC22O60826 627 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 CTLA4P16410 223 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 SELEP16581 610 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 ZNF26P17031 533 aaPredicted RBP11.39□□□□□ -0.59
CHD3-209ENST00000473376 RHCEP18577 417 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 GATA4P43694 442 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 SRP9P49458 86 aaKnown RBP11.39□□□□□ -0.59
CHD3-209ENST00000473376 RPS6KA3P51812 740 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 BPIFB3P59826 476 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 ECH1Q13011 328 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 KRR1Q13601 381 aaKnown RBP11.39□□□□□ -0.59
CHD3-209ENST00000473376 ZMYND11Q15326 602 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 CGB2Q6NT52 195 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 DNM1P34Q6PK57 102 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 COLCA1Q6ZS62 124 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 OR8G5Q8NG78 346 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 RCN3Q96D15 328 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 HSH2DQ96JZ2 352 aa11.39□□□□□ -0.59
CHD3-209ENST00000473376 ZNF582Q96NG8 517 aaPredicted RBP11.39□□□□□ -0.59
CHD3-209ENST00000473376 OR2V2Q96R30 315 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms