RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 CMC2Q9NRP2 79 aa9.15□□□□□ -0.94
USP39-210ENST00000459775 ING1Q9UK53 422 aaPredicted RBP9.15□□□□□ -0.94
USP39-210ENST00000459775 KIAA1549Q9HCM3 1950 aa9.15□□□□□ -0.94
USP39-210ENST00000459775 SPTA1P02549 2419 aa9.15□□□□□ -0.95
USP39-210ENST00000459775 HECTD1Q9ULT8 2610 aa9.15□□□□□ -0.95
USP39-210ENST00000459775 IGKV1D-43A0A0B4J1Z2 117 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SMIM31A0A1B0GVY4 71 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ADAM20O43506 726 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ZFPL1O95159 310 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ACTL6AO96019 429 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SDHAP31040 664 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 PYCR1P32322 319 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 GRK5P34947 590 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 BMXP51813 675 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 CHN2P52757 468 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SLC16A1P53985 500 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 CLDN17P56750 224 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 IL18R1Q13478 541 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 KRR1Q13601 381 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 SSX2Q16385 188 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 KLHL12Q53G59 568 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 EMC4Q5J8M3 183 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SPATA46Q5T0L3 261 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 RPL13AP3Q6NVV1 102 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 FAM180AQ6UWF9 173 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 PXKQ7Z7A4 578 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ATCAYQ86WG3 371 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 UEVLDQ8IX04 471 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ASCC1Q8N9N2 400 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 C1orf162Q8NEQ5 155 aaPredicted RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 OR8J1Q8NGP2 316 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ZNF582Q96NG8 517 aaPredicted RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 DDOQ99489 341 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SYT4Q9H2B2 425 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ASB6Q9NWX5 421 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 WARS2Q9UGM6 360 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 A0A075B6Q4 140 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 A0A1W2PRG6 482 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SLC35F4A4IF30 521 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 RIIAD1A6NNX1 92 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 CLCA1A8K7I4 914 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SLC1A7O00341 560 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 TSPAN4O14817 238 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ARPC3O15145 178 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SCGB1D1O95968 90 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 BCL10O95999 233 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 IGHV3-9P01782 118 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 LYNP07948 512 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ZNF43P17038 809 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 FKBP2P26885 142 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 CD1BP29016 333 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 RPL27P61353 136 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 ZP4Q12836 540 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 C1DQ13901 141 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 SLC17A1Q14916 467 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 MFSD13AQ14CX5 517 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 PNLIPRP3Q17RR3 467 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 PHYHD1Q5SRE7 291 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 PDSS1Q5T2R2 415 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 SFRP5Q5T4F7 317 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ZNF324BQ6AW86 544 aaPredicted RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 ZNF585AQ6P3V2 769 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 CREB3L2Q70SY1 520 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 FCRLAQ7L513 359 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 CXXC5Q7LFL8 322 aaKnown RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 MEIOBQ8N635 442 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ARIH2OSQ8N7S6 290 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 OR9K2Q8NGE7 335 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ZNF519Q8TB69 540 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 FAR1Q8WVX9 515 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ASB10Q8WXI3 467 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 DPF1Q92782 380 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 GPR137Q96N19 417 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 OXGR1Q96P68 337 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 PSMG3-AS1Q96PY0 264 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 ALX4Q9H161 411 aaPredicted RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 TXNIPQ9H3M7 391 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 TMEM140Q9NV12 185 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 TAS2R16Q9NYV7 291 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 H2AFY2Q9P0M6 372 aaPredicted RBP9.14□□□□□ -0.95
USP39-210ENST00000459775 POMT1Q9Y6A1 747 aa9.14□□□□□ -0.95
USP39-210ENST00000459775 A0A1W2PNV4 684 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 TTLL8A6PVC2 850 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 H7C1Q1 480 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 FZD7O75084 574 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 HTR1AP08908 422 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 CPN1P15169 458 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 CRHBPP24387 322 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ACVR2AP27037 513 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 SELENOPP49908 381 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 HCCSP53701 268 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 TAS2R60P59551 318 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 SNRPGP62308 76 aaKnown RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 APOFQ13790 326 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 GCNT2Q8N0V5 402 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 OR6V1Q8N148 313 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 WFDC12Q8WWY7 111 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ZMYND19Q96E35 227 aaPredicted RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 ZNF479Q96JC4 524 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms