RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CDKL3Q8IVW4 592 aaPredicted RBP2.12□□□□□ -2.07
USP40-209ENST00000452724 MYOCDQ8IZQ8 938 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 IQCKQ8N0W5 287 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 OSR2Q8N2R0 312 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 NECAP1Q8NC96 275 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 ACMSDQ8TDX5 336 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 ELMO1Q92556 727 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 FOXC2Q99958 501 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 LZTS2Q9BRK4 669 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 ULBP2Q9BZM5 246 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 TMEM9BQ9NQ34 198 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 VANGL2Q9ULK5 521 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 HYOU1Q9Y4L1 999 aa2.12□□□□□ -2.07
USP40-209ENST00000452724 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.11□□□□□ -2.07
USP40-209ENST00000452724 IGHV1OR15-9A0A0B4J2B8 117 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 GOLGA8OA6NCC3 632 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 ZNF850A8MQ14 1090 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 GOLGA8NF8WBI6 632 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 L7N2F9 121 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 SOCS1O15524 211 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 RDH16O75452 317 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 WBP4O75554 376 aaKnown RBP2.11□□□□□ -2.07
USP40-209ENST00000452724 CCNE2O96020 404 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 EIF4EP06730 217 aaKnown RBP2.11□□□□□ -2.07
USP40-209ENST00000452724 ZNF806P0C7X5 589 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 RAB3AP20336 220 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 RRM2P31350 389 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 SLC1A1P43005 524 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 CXCL12P48061 93 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 P2RX1P51575 399 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 STXBP1P61764 594 aaKnown RBP2.11□□□□□ -2.07
USP40-209ENST00000452724 SOHLH1Q5JUK2 328 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 DNLZQ5SXM8 178 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 AVPI1Q5T686 147 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 UBE2UQ5VVX9 321 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 RAET1LQ5VY80 246 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 ZFP1Q6P2D0 407 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 MBOAT1Q6ZNC8 495 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 SLC16A14Q7RTX9 510 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 SNX20Q7Z614 316 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 CDH26Q8IXH8 852 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 OR10AD1Q8NGE0 317 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 LINC01560Q8TB33 94 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 RAB3IL1Q8TBN0 382 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 LRRC29Q8WV35 223 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 PTX4Q96A99 478 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 NEUROG2Q9H2A3 272 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 OR52D1Q9H346 318 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 EDA2RQ9HAV5 297 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 TSSC4Q9Y5U2 329 aaPredicted RBP2.11□□□□□ -2.07
USP40-209ENST00000452724 TUBGCP6Q96RT7 1819 aa2.11□□□□□ -2.07
USP40-209ENST00000452724 DOCK8Q8NF50 2099 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 C9JVG2 144 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 SIRPB1O00241 398 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 SNX4O95219 450 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 H6PDO95479 791 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 IL4P05112 153 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 ERGP11308 486 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 KIR3DL2P43630 455 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 RAB10P61026 200 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 PPP1CBP62140 327 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 PIGHQ14442 188 aaPredicted RBP2.1□□□□□ -2.07
USP40-209ENST00000452724 MRPL23Q16540 153 aaKnown RBP2.1□□□□□ -2.07
USP40-209ENST00000452724 KPRPQ5T749 579 aaPredicted RBP2.1□□□□□ -2.07
USP40-209ENST00000452724 PRR9Q5T870 116 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 GPR107Q5VW38 600 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 C22orf42Q6IC83 251 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 REEP3Q6NUK4 255 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 SLC16A13Q7RTY0 426 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 WDFY1Q8IWB7 410 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 CMTM1Q8IZ96 169 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 GATSQ8NAP1 163 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 OR4A4PQ8NGN8 299 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 LILRB4Q8NHJ6 448 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 CIRBP-AS1Q8TBR5 109 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 SLC38A4Q969I6 547 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 TMEM230Q96A57 120 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 EEF1AKMT3Q96AZ1 226 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 ZNF488Q96MN9 340 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 PLIN2Q99541 437 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 PITPNC1Q9UKF7 332 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 S4R3C0 116 aa2.1□□□□□ -2.07
USP40-209ENST00000452724 YEATS2Q9ULM3 1422 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 H0YJW9 148 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 SMKR1H3BMG3 65 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 DNASE2O00115 360 aaPredicted RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 UBXN8O00124 270 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 IGHDP01880 384 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 ARG1P05089 322 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 SERPINE2P07093 398 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CTSLP07711 333 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 OR8U9P0C7N5 309 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 PABPC4LP0CB38 370 aaKnown RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 CT45A6P0DMU7 189 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CT45A5P0DMU8 189 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 CT45A7P0DMV0 189 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 PBLDP30039 288 aaPredicted RBP2.09□□□□□ -2.07
USP40-209ENST00000452724 CDKN2DP55273 166 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 PRMT2P55345 433 aa2.09□□□□□ -2.07
USP40-209ENST00000452724 EIF3EP60228 445 aaKnown RBP2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms